CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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gw1.33.170.1
(
Trichoderma virens
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
gw1.33.170.1
T53234_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CADANIAG00004740
M241_0.6
Aspergillus nidulans
UACUAMK
RNAcompete
Ray et al.(2013)
RNCMPT00287
0.789
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.33.170.1
RRM
30
100
LFVGNLAGETTDESLLKAFARWKSVQKARVIRDKRTTKSKGYGFVSFSDADDFFQAAKEMHGKYIQSHPVV
Links
Other
RRM
family RBPs
Other
Trichoderma virens
RBPs
48 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
e_gw1.3.1071.1
Trichoderma reesei
e_gw1.3.1071.1
I
0.986
e_gw1.1.2591.1
Trichoderma atroviride
e_gw1.1.2591.1
I
0.986
GLRG_01583
Colletotrichum graminicola
GLRG_01583
I
0.944
Pa_1_11770
Podospora anserina
Pa_1_11770
I
0.915
gw1.6.1720.1
Cryphonectria parasitica
gw1.6.1720.1
I
0.915
CHGG_00842
Chaetomium globosum
CHGG_00842
I
0.915
fgenesh1_pg.sca_1_chr1_3_0000264
Nectria haematococca
fgenesh1_pg.sca_1_chr1_3_0000264
I
0.915
MGG_01274
Magnaporthe oryzae
MGG_01274
I
0.901
estExt_Genewise1Plus.C_50687
Neurospora tetrasperma
estExt_Genewise1Plus.C_50687
I
0.901
estExt_fgenesh3_kg.C_70295
Neurospora discreta
estExt_fgenesh3_kg.C_70295
I
0.901
FGSG_11902
Fusarium graminearum
FGSG_11902
I
0.901
NCU03099
Neurospora crassa
NCU03099
I
0.901
FVEG_01237
Fusarium verticillioides
FVEG_01237
I
0.887
FOXG_00280
Fusarium oxysporum
FOXG_00280
I
0.887
estExt_fgenesh1_pg.C_20919
Myceliophthora thermophila
estExt_fgenesh1_pg.C_20919
I
0.887
estExt_Genewise1Plus.C_13260
Thielavia terrestris
estExt_Genewise1Plus.C_13260
I
0.887
VDAG_04412
Verticillium dahliae
VDAG_04412
I
0.887
BC1G_02746
Botrytis cinerea
BC1G_02746
I
0.845
SS1G_09871
Sclerotinia sclerotiorum
SS1G_09871
I
0.845
fgenesh1_pm.00118_#_519
Aspergillus carbonarius
fgenesh1_pm.00118_#_519
I
0.817
AO090003000122
Aspergillus oryzae
CADAORAG00000798
I
0.817
AFLA_036830
Aspergillus flavus
CADAFLAG00003057
I
0.817
ACLA_082600
Aspergillus clavatus
CADACLAG00007506
I
0.803
An11g02050
Aspergillus niger
CADANGAG00008541
I
0.803
MCYG_08625
Microsporum canis
MCYG_08625
I
0.803
ATEG_05852
Aspergillus terreus
CADATEAG00002953
I
0.803
CADANIAG00004740
Aspergillus nidulans
CADANIAG00004740
D
0.789
AFUA_6G08040
Aspergillus fumigatus
CADAFUAG00002290
I
0.789
NFIA_053730
Neosartorya fischeri
CADNFIAG00004585
I
0.789
PABG_01757
Paracoccidioides brasiliensis
PABG_01757
I
0.789
GSTUMT00010522001
Tuber melanosporum
GSTUMT00010522001
I
0.789
ARB_07912
Arthroderma benhamiae
ARB_07912
I
0.789
TEQG_04534
Trichophyton equinum
TEQG_04534
I
0.789
TERG_02769
Trichophyton rubrum
TERG_02769
I
0.789
TRV_04123
Trichophyton verrucosum
TRV_04123
I
0.789
TESG_08545
Trichophyton tonsurans
TESG_08545
I
0.789
BDBG_03382
Blastomyces dermatitidis
BDBG_03382
I
0.775
Pc12g10950
Penicillium chrysogenum
Pc12g10950
I
0.775
CPSG_02060
Coccidioides posadasii
CPSG_02060
I
0.775
UREG_01087
Uncinocarpus reesii
UREG_01087
I
0.775
CIMG_01152
Coccidioides immitis
CIMG_01152
I
0.775
HCAG_05883
Histoplasma capsulatum
HCAG_05883
I
0.775
estExt_Genewise1.C_320079
Cochliobolus heterostrophus C5
estExt_Genewise1.C_320079
I
0.732
PTRG_02274
Pyrenophora tritici repentis
PTRG_02274
I
0.732
AB09441.1
Alternaria brassicicola
AB09441.1
I
0.732
PMAA_072470
Penicillium marneffei
PMAA_072470
I
0.718
SNOG_15877
Stagonospora nodorum
SNOG_15877
I
0.704
EAT76715.1
Phaeosphaeria nodorum
EAT76715.1
I
0.704