CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SS1G_09871
(
Sclerotinia sclerotiorum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
SS1G_09871
T30989_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CADANIAG00004740
M241_0.6
Aspergillus nidulans
UACUAMK
RNAcompete
Ray et al.(2013)
RNCMPT00287
0.859
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
SS1T_09871
RRM
242
312
LFVGNLAGEVTDESLHKAFSRWSSLQKARVIRDKRTTKSKGYGFVSFSDGDDFFQAARDMQGKYIGSHPVL
Links
Other
RRM
family RBPs
Other
Sclerotinia sclerotiorum
RBPs
48 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BC1G_02746
Botrytis cinerea
BC1G_02746
I
0.986
e_gw1.1.2591.1
Trichoderma atroviride
e_gw1.1.2591.1
I
0.859
CADANIAG00004740
Aspergillus nidulans
CADANIAG00004740
D
0.859
AFUA_6G08040
Aspergillus fumigatus
CADAFUAG00002290
I
0.859
e_gw1.3.1071.1
Trichoderma reesei
e_gw1.3.1071.1
I
0.859
An11g02050
Aspergillus niger
CADANGAG00008541
I
0.859
MCYG_08625
Microsporum canis
MCYG_08625
I
0.859
ATEG_05852
Aspergillus terreus
CADATEAG00002953
I
0.859
NFIA_053730
Neosartorya fischeri
CADNFIAG00004585
I
0.859
fgenesh1_pm.00118_#_519
Aspergillus carbonarius
fgenesh1_pm.00118_#_519
I
0.845
PABG_01757
Paracoccidioides brasiliensis
PABG_01757
I
0.845
GLRG_01583
Colletotrichum graminicola
GLRG_01583
I
0.845
ARB_07912
Arthroderma benhamiae
ARB_07912
I
0.845
TEQG_04534
Trichophyton equinum
TEQG_04534
I
0.845
gw1.33.170.1
Trichoderma virens
gw1.33.170.1
I
0.845
TRV_04123
Trichophyton verrucosum
TRV_04123
I
0.845
TESG_08545
Trichophyton tonsurans
TESG_08545
I
0.845
AFLA_036830
Aspergillus flavus
CADAFLAG00003057
I
0.845
AO090003000122
Aspergillus oryzae
CADAORAG00000798
I
0.845
TERG_02769
Trichophyton rubrum
TERG_02769
I
0.845
GSTUMT00010522001
Tuber melanosporum
GSTUMT00010522001
I
0.831
ACLA_082600
Aspergillus clavatus
CADACLAG00007506
I
0.831
CPSG_02060
Coccidioides posadasii
CPSG_02060
I
0.831
BDBG_03382
Blastomyces dermatitidis
BDBG_03382
I
0.831
UREG_01087
Uncinocarpus reesii
UREG_01087
I
0.831
HCAG_05883
Histoplasma capsulatum
HCAG_05883
I
0.831
CIMG_01152
Coccidioides immitis
CIMG_01152
I
0.831
FGSG_11902
Fusarium graminearum
FGSG_11902
I
0.817
fgenesh1_pg.sca_1_chr1_3_0000264
Nectria haematococca
fgenesh1_pg.sca_1_chr1_3_0000264
I
0.817
MGG_01274
Magnaporthe oryzae
MGG_01274
I
0.817
FVEG_01237
Fusarium verticillioides
FVEG_01237
I
0.803
FOXG_00280
Fusarium oxysporum
FOXG_00280
I
0.803
PMAA_072470
Penicillium marneffei
PMAA_072470
I
0.803
estExt_fgenesh3_kg.C_70295
Neurospora discreta
estExt_fgenesh3_kg.C_70295
I
0.803
estExt_Genewise1Plus.C_50687
Neurospora tetrasperma
estExt_Genewise1Plus.C_50687
I
0.803
Pa_1_11770
Podospora anserina
Pa_1_11770
I
0.803
gw1.6.1720.1
Cryphonectria parasitica
gw1.6.1720.1
I
0.803
NCU03099
Neurospora crassa
NCU03099
I
0.803
estExt_Genewise1Plus.C_13260
Thielavia terrestris
estExt_Genewise1Plus.C_13260
I
0.789
estExt_fgenesh1_pg.C_20919
Myceliophthora thermophila
estExt_fgenesh1_pg.C_20919
I
0.789
VDAG_04412
Verticillium dahliae
VDAG_04412
I
0.789
Pc12g10950
Penicillium chrysogenum
Pc12g10950
I
0.789
CHGG_00842
Chaetomium globosum
CHGG_00842
I
0.789
SNOG_15877
Stagonospora nodorum
SNOG_15877
I
0.746
EAT76715.1
Phaeosphaeria nodorum
EAT76715.1
I
0.746
AB09441.1
Alternaria brassicicola
AB09441.1
I
0.732
PTRG_02274
Pyrenophora tritici repentis
PTRG_02274
I
0.732
estExt_Genewise1.C_320079
Cochliobolus heterostrophus C5
estExt_Genewise1.C_320079
I
0.732