LOC_Os07g49220 (Oryza sativa)
S1

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00575 (S1) IPR003029 LOC_Os07g49220 T60710_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
eIF-2alpha
M231_0.6 		Drosophila melanogaster WGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00273 		0.724
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os07g49220.1 S1 14 88

Links

Other S1 family RBPs
Other Oryza sativa RBPs

187 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BGIOSIBCE026135 Oryza indica BGIOSIBCE026135 I 1.000
LOC_Os03g18510 Oryza sativa LOC_Os03g18510 I 0.880
GRMZM2G083262 Zea mays GRMZM2G083262 I 0.880
BGIOSIBCE010732 Oryza indica BGIOSIBCE010732 I 0.880
SB01G038230 Sorghum bicolor Sb01g038230 I 0.880
GRMZM2G058138 Zea mays GRMZM2G058138 I 0.880
BRADI1G16700 Brachypodium distachyon BRADI1G16700 I 0.867
BRADI1G65210 Brachypodium distachyon BRADI1G65210 N 0.867
estExt_fgenesh1_pm.C_210071 Selaginella moellendorfii estExt_fgenesh1_pm.C_210071 I 0.840
mgf006782m Mimulus guttatus mgf006782m I 0.816
Medtr3g094720 Medicago truncatula Medtr3g094720 I 0.816
GSVIVG00024676001 Vitis vinifera GSVIVG00024676001 I 0.816
Medtr3g094730 Medicago truncatula Medtr3g094730 I 0.803
Medtr3g094740 Medicago truncatula Medtr3g094740 I 0.803
Glyma18g02820.1 Glycine max Glyma18g02820.1 I 0.803
Glyma11g35600.1 Glycine max Glyma11g35600.1 I 0.803
XM_002881666.1 Arabidopsis lyrata fgenesh2_kg.4__2141__AT2G40290.1 I 0.803
PK10564.1 Cannabis sativa PK10564.1 I 0.803
29607.m000238 Ricinus communis 29607.m000238 I 0.803
B9HSK1_POPTR Populus trichocarpa POPTR_0010s19230 I 0.803
B9HHU6_POPTR Populus trichocarpa POPTR_0008s07250 I 0.803
AT2G40290 Arabidopsis thaliana AT2G40290-TAIR-G I 0.803
Cucsa.239320 Cucumis sativus Cucsa.239320 I 0.803
MDP0000663428 Malus x domestica MDP0000663428 I 0.803
ppa008120m Prunus persica ppa008120m I 0.803
estExt_gwp_gw1.C_3520018 Physcomitrella patens estExt_gwp_gw1.C_3520018 I 0.803
LjSGA_031492.1 Lotus japonicus LjSGA_031492.1 I 0.803
EIF2 Arabidopsis thaliana AT5G05470-TAIR-G I 0.800
MDP0000155133 Malus x domestica MDP0000155133 I 0.800
cassava16515.m1 Manihot esculenta cassava16515.m1 I 0.800
fgenesh1_pg.scaffold_55000187 Physcomitrella patens fgenesh1_pg.scaffold_55000187 I 0.789
cassava7658.valid.m1 Manihot esculenta cassava7658.valid.m1 I 0.789
cassava7659.valid.m1 Manihot esculenta cassava7659.valid.m1 I 0.789
estExt_fgenesh4_pg.C_220183 Volvox carteri estExt_fgenesh4_pg.C_220183 I 0.789
e_gwW.11.341.1 Chlamydomonas reinhardtii e_gwW.11.341.1 I 0.789
XM_002873169.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_6000426 N 0.787
estExt_Genewise1.C_110295 Coccomyxa C 169 estExt_Genewise1.C_110295 I 0.776
estExt_Genewise1.C_100332 Chlorella vulgaris estExt_Genewise1.C_100332 I 0.776
IGS.gm_12_00191 Chlorella NC64A IGS.gm_12_00191 I 0.760
estExt_fgenesh2_pm.C_sca_10068 Lottia gigantea estExt_fgenesh2_pm.C_sca_10068 I 0.760
estExt_fgenesh1_pg.C_210136 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_210136 I 0.750
SNOG_13280 Stagonospora nodorum SNOG_13280 I 0.750
PTRG_05239 Pyrenophora tritici repentis PTRG_05239 I 0.750
AB05699.1 Alternaria brassicicola AB05699.1 I 0.750
EAT79164.1 Phaeosphaeria nodorum EAT79164.1 I 0.750
EIF2S1 Ornithorhynchus anatinus ENSOANG00000005409 I 0.747
EIF2S1 Monodelphis domestica ENSMODG00000009911 I 0.747
Eif2s1 Mus musculus ENSMUSG00000021116 I 0.747
EIF2S1 Macaca mulatta ENSMMUG00000021419 I 0.747
EIF2S1 Ochotona princeps ENSOPRG00000004520 I 0.747
EIF2S1 Sus scrofa ENSSSCG00000002289 I 0.747
EIF2S1 Spermophilus tridecemlineatus ENSSTOG00000001565 I 0.747
Q7ZTK4 Xenopus laevis Q7ZTK4 I 0.747
AAH46576 Xenopus laevis AAH46576 I 0.747
EIF2S1 Sorex araneus ENSSARG00000011682 I 0.747
EIF2S1 Pan troglodytes ENSPTRG00000006462 I 0.747
EIF2S1 Oryzias latipes ENSORLG00000011844 I 0.747
EIF2S1 Procavia capensis ENSPCAG00000002613 I 0.747
ENSPPYG00000005921 Pongo pygmaeus ENSPPYG00000005921 I 0.747
IF2A_RABIT Oryctolagus cuniculus ENSOCUG00000012023 I 0.747
EIF2S1 Meleagris gallopavo ENSMGAG00000011974 I 0.747
eif2s1l Danio rerio ENSDARG00000005827 I 0.747
EIF2S1 Cavia porcellus ENSCPOG00000003313 I 0.747
LOC100399114 Callithrix jacchus ENSCJAG00000015368 I 0.747
eif2s1 Danio rerio ENSDARG00000052178 I 0.747
EIF2S1 Homo sapiens ENSG00000134001 I 0.747
LOC100052709 Equus caballus ENSECAG00000018424 I 0.747
EIF2S1 Echinops telfairi ENSETEG00000019003 I 0.747
Eif2s1 Dipodomys ordii ENSDORG00000002382 I 0.747
EIF2S1 Canis familiaris ENSCAFG00000016386 I 0.747
IF2A_BOVIN Bos taurus ENSBTAG00000016311 I 0.747
EIF2S1 Loxodonta africana ENSLAFG00000013423 I 0.747
EIF2S1 Erinaceus europaeus ENSEEUG00000010225 I 0.747
EIF2S1 Microcebus murinus ENSMICG00000010793 I 0.747
EIF2S1 Taeniopygia guttata ENSTGUG00000011542 I 0.747
IF2A_CHICK Gallus gallus ENSGALG00000009565 I 0.747
EIF2S1 Anolis carolinensis ENSACAG00000005994 I 0.747
EIF2S1 Gasterosteus aculeatus ENSGACG00000008569 I 0.747
SPPG_00622 Spizellomyces punctatus SPPG_00622 I 0.747
Eif2s1 Rattus norvegicus ENSRNOG00000009432 I 0.747
Ame_R013633 Ailuropoda melanoleuca Ame_R013633 I 0.747
EIF2S1 Gorilla gorilla ENSGGOG00000001603 I 0.747
estExt_fgenesh1_kg.C_70012 Micromonas pusilla estExt_fgenesh1_kg.C_70012 I 0.747
EIF2S1 Takifugu rubripes ENSTRUG00000017958 I 0.747
e_gwEuk.2.353.1 Ostreococcus lucimarinus e_gwEuk.2.353.1 I 0.747
estExt_Genewise1Plus.C_2350006 Capitella teleta estExt_Genewise1Plus.C_2350006 I 0.747
EIF2S1 Tetraodon nigroviridis ENSTNIG00000012223 I 0.747
AGAP011190 Anopheles gambiae AGAP011190 I 0.737
fgenesh1_pm.C_scaffold_10000060 Batrachochytrium dendrobatidis fgenesh1_pm.C_scaffold_10000060 I 0.737
THAPSDRAFT_105 Thalassiosira pseudonana Thaps105 I 0.737
genemark.2222_g Pleurotus ostreatus genemark.2222_g I 0.737
estExt_fgenesh2_kg.C_21286 Serpula lacrymans estExt_fgenesh2_kg.C_21286 I 0.737
nasonia_NCBI_hmm338664 Nasonia vitripennis nasonia_NCBI_hmm338664 I 0.737
CpipJ_CPIJ011194 Culex pipiens CpipJ_CPIJ011194 I 0.737
PHUM551010 Pediculus humanus PHUM551010 I 0.737
estExt_Genewise1.C_100122 Postia placenta estExt_Genewise1.C_100122 I 0.737
CPIJ011194 Culex quinquefasciatus CPIJ011194 I 0.737
e_gww2.12.213.1 Phanerochaete chrysosporium e_gww2.12.213.1 I 0.737
amel4_ncbi_hmm23817 Apis mellifera amel4_ncbi_hmm23817 I 0.737
BGIBMGA004302 Bombyx mori BGIBMGA004302 I 0.737
ENSCHOG00000009030 Choloepus hoffmanni ENSCHOG00000009030 I 0.733
ENSCHOG00000003744 Choloepus hoffmanni ENSCHOG00000003744 I 0.733
EIF2S1 Tursiops truncatus ENSTTRG00000015806 I 0.733
XP_001176254.1 Strongylocentrotus purpuratus XP_001176254.1 I 0.733
XP_001176396.1 Strongylocentrotus purpuratus XP_001176396.1 I 0.733
XP_779939.1 Strongylocentrotus purpuratus XP_779939.1 I 0.733
XP_801812.1 Strongylocentrotus purpuratus XP_801812.1 I 0.733
estExt_fgenesh1_kg.C_130002 Sporobolomyces roseus estExt_fgenesh1_kg.C_130002 I 0.733
PASA_GEN_0500123 Daphnia pulex PASA_GEN_0500123 I 0.724
e_gw.114.57.1 Nematostella vectensis e_gw.114.57.1 I 0.724
GL20268 Drosophila persimilis FBgn0157863 I 0.724
AAEL013675 Aedes aegypti AAEL013675 I 0.724
GI21763 Drosophila mojavensis FBgn0144493 I 0.724
GD15749 Drosophila simulans FBgn0187410 I 0.724
GA22144-RA Drosophila pseudoobscura FBgn0082124 I 0.724
GF19374 Drosophila ananassae FBgn0096384 I 0.724
GJ19141 Drosophila virilis FBgn0206286 I 0.724
GK25248 Drosophila willistoni FBgn0227207 I 0.724
eIF-2alpha Drosophila melanogaster FBgn0261609 D 0.724
GE15968 Drosophila yakuba FBgn0233524 I 0.724
estExt_fgenesh2_pm.C_120283 Heterobasidion annosum estExt_fgenesh2_pm.C_120283 I 0.724
estExt_GenewiseH_1.C_750056 Nematostella vectensis estExt_GenewiseH_1.C_750056 I 0.724
GG19321 Drosophila erecta FBgn0111525 I 0.724
GM13399 Drosophila sechellia FBgn0168330 I 0.724
fgenesh1_pm.C_scaffold_69000005 Phytophthora ramorum fgenesh1_pm.C_scaffold_69000005 I 0.720
estExt_fgenesh2_pm.C_1660010 Branchiostoma floridae estExt_fgenesh2_pm.C_1660010 I 0.720
estExt_fgenesh2_pm.C_5760005 Branchiostoma floridae estExt_fgenesh2_pm.C_5760005 I 0.720
ENSCHOG00000004230 Choloepus hoffmanni ENSCHOG00000004230 I 0.720
TESG_05324 Trichophyton tonsurans TESG_05324 I 0.720
estExt_fgenesh1_pg.C_Chr_02.00010078 Ostreococcus tauri estExt_fgenesh1_pg.C_Chr_02.00010078 I 0.720
LOAG_09556 Loa loa LOAG_09556 I 0.720
MCYG_00123 Microsporum canis MCYG_00123 I 0.720
HCAG_01136 Histoplasma capsulatum HCAG_01136 I 0.720
Bm1_04900 Brugia malayi Bm1_04900 I 0.720
e_gw1.7.228.1 Trichoplax adhaerens e_gw1.7.228.1 I 0.720
ARB_05709 Arthroderma benhamiae ARB_05709 I 0.720
EIF2S1 Pteropus vampyrus ENSPVAG00000003040 I 0.720
69770 Aureococcus anophagefferens 69770 I 0.720
MGYG_00686 Microsporum gypseum MGYG_00686 I 0.720
Scas_Contig617.9 Saccharomyces castellii Scas_Contig617.9 I 0.720
Scas_Contig479.2 Saccharomyces castellii Scas_Contig479.2 I 0.720
WUBG_12485 Wuchereria bancrofti WUBG_12485 I 0.720
PITG_07885 Phytophthora infestans PITG_07885 I 0.720
TRV_03711 Trichophyton verrucosum TRV_03711 I 0.720
TEQG_01370 Trichophyton equinum TEQG_01370 I 0.720
TERG_00559 Trichophyton rubrum TERG_00559 I 0.720
72304 Aureococcus anophagefferens 72304 I 0.720
ISCW017360 Ixodes scapularis ISCW017360 I 0.711
CLUG_04130 Candida lusitaniae CLUG_04130 I 0.711
e_gw1.3.2112.1 Cryphonectria parasitica e_gw1.3.2112.1 I 0.711
Skud_Contig1955.10 Saccharomyces kudriavzevii Skud_Contig1955.10 I 0.711
PredSwiss_EST393.1 Pneumocystis carinii PredSwiss_EST393.1 I 0.711
GSTUMT00002346001 Tuber melanosporum GSTUMT00002346001 I 0.711
KLTH0B02002g Kluyveromyces thermotolerans KLTH0B02002g I 0.711
PMAA_021520 Penicillium marneffei PMAA_021520 I 0.711
Kwal_15422 Kluyveromyces waltii Kwal_15422 I 0.711
estExt_Genewise1Plus.C_sca_18_chr2_1_00859 Nectria haematococca estExt_Genewise1Plus.C_sca_18_chr2_1_00859 I 0.711
estExt_Genewise1.C_30452 Schizophyllum commune estExt_Genewise1.C_30452 I 0.711
estExt_fgenesh1_pg.C_20141 Mycosphaerella fijiensis estExt_fgenesh1_pg.C_20141 I 0.711
e_gwh1.12.106.1 Laccaria bicolor e_gwh1.12.106.1 I 0.711
estExt_fgenesh1_pm.C_chr_100036 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_100036 I 0.711
estExt_Genewise1.C_100430 Trichoderma atroviride estExt_Genewise1.C_100430 I 0.711
estExt_Genewise1.C_21511 Trichoderma virens estExt_Genewise1.C_21511 I 0.711
estExt_Genewise1.C_10111 Trichoderma reesei estExt_Genewise1.C_10111 I 0.711
VDBG_01622 Verticillium albo atrum VDBG_01622 I 0.711
YALI0B01034g Yarrowia lipolytica YALI0B01034g I 0.711
LELG_00811 Lodderomyces elongisporus LELG_00811 I 0.711
CPSG_04829 Coccidioides posadasii CPSG_04829 I 0.711
GLRG_02833 Colletotrichum graminicola GLRG_02833 I 0.711
CTRG_04191 Candida tropicalis CTRG_04191 I 0.711
FOXG_08491 Fusarium oxysporum FOXG_08491 I 0.711
DEHA0F26235g Debaryomyces hansenii DEHA0F26235g I 0.711
CPAG_01889 Candida parapsilosis CPAG_01889 I 0.711
CIMG_00109 Coccidioides immitis CIMG_00109 I 0.711
BC1G_14334 Botrytis cinerea BC1G_14334 I 0.711
VDAG_01930 Verticillium dahliae VDAG_01930 I 0.711
FVEG_06185 Fusarium verticillioides FVEG_06185 I 0.711
BDBG_06604 Blastomyces dermatitidis BDBG_06604 I 0.711
UREG_00217 Uncinocarpus reesii UREG_00217 I 0.711
CC1G_08524 Coprinopsis cinerea CC1G_08524 I 0.711
114622 Helobdella robusta 114622 I 0.707
fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263 Emiliania huxleyi fgenesh_newKGs_kg.236__13__EST_ALL.fasta.Contig10263 I 0.707
AMAG_04113 Allomyces macrogynus AMAG_04113 I 0.707
AMSG_04936 Thecamonas trahens AMSG_04936 I 0.707
KLLA0A11814g Kluyveromyces lactis KLLA0A11814g I 0.707
AMAG_01618 Allomyces macrogynus AMAG_01618 I 0.707
fgenesh1_pg.C_scaffold_2000543 Melampsora laricis populina fgenesh1_pg.C_scaffold_2000543 I 0.707