CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Smp_040460
(
Schistosoma mansoni
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
Smp_040460
T62568_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Smp_040460
YTH
614
704
LFFSVNGSGHFCGMAEMVSRVDYNARASVWAQDKWQGKFSVRWIFVKDVPNTALRHIRIETNDNKPVTHSRDTTELPLERGKQVMEVLATY
Links
Other
YTH
family RBPs
Other
Schistosoma mansoni
RBPs
117 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Sjc_0086280
Schistosoma japonicum
Sjc_0086280
N
0.989
ENSMEUG00000011285
Macropus eugenii
ENSMEUG00000011285
N
0.736
ENSMICG00000009379
Microcebus murinus
ENSMICG00000009379
N
0.736
ENSMMUG00000006729
Macaca mulatta
ENSMMUG00000006729
N
0.736
Ythdf3
Mus musculus
ENSMUSG00000047213
N
0.736
ENSMODG00000008255
Monodelphis domestica
ENSMODG00000008255
N
0.736
ENSLAFG00000016052
Loxodonta africana
ENSLAFG00000016052
N
0.736
ENSGGOG00000027681
Gorilla gorilla
ENSGGOG00000027681
N
0.736
estExt_fgenesh1_pm.C_4090006
Capitella teleta
estExt_fgenesh1_pm.C_4090006
N
0.736
ENSG00000185728
Homo sapiens
ENSG00000185728
N
0.736
Q5ZLM1_CHICK
Gallus gallus
ENSGALG00000015505
N
0.736
LOC776373
Gallus gallus
ENSGALG00000019473
N
0.736
ENSOCUG00000008723
Oryctolagus cuniculus
ENSOCUG00000008723
N
0.736
ENSPCAG00000016282
Procavia capensis
ENSPCAG00000016282
N
0.736
YTHDF3
Taeniopygia guttata
ENSTGUG00000011243
N
0.736
ENSTBEG00000005747
Tupaia belangeri
ENSTBEG00000005747
N
0.736
ENSTNIG00000012698
Tetraodon nigroviridis
ENSTNIG00000012698
N
0.736
ENSTRUG00000007870
Takifugu rubripes
ENSTRUG00000007870
N
0.736
ENSTSYG00000009117
Tarsius syrichta
ENSTSYG00000009117
N
0.736
ENSSARG00000007626
Sorex araneus
ENSSARG00000007626
N
0.736
Ythdf3
Rattus norvegicus
ENSRNOG00000010084
N
0.736
ENSPPYG00000018626
Pongo pygmaeus
ENSPPYG00000018626
N
0.736
ENSVPAG00000008104
Vicugna pacos
ENSVPAG00000008104
N
0.736
ENSTTRG00000014564
Tursiops truncatus
ENSTTRG00000014564
N
0.736
XR_024462.1
Pan troglodytes
ENSPTRG00000030993
N
0.736
ENSPVAG00000002740
Pteropus vampyrus
ENSPVAG00000002740
N
0.736
ENSETEG00000007144
Echinops telfairi
ENSETEG00000007144
N
0.736
ENSMGAG00000011168
Meleagris gallopavo
ENSMGAG00000011168
N
0.736
ENSCAFG00000007215
Canis familiaris
ENSCAFG00000007215
N
0.736
YTHDF3
Bos taurus
ENSBTAG00000018557
N
0.736
Ythdf3
Dipodomys ordii
ENSDORG00000014699
N
0.736
YTHDF3
Callithrix jacchus
ENSCJAG00000009217
N
0.736
ENSCPOG00000002961
Cavia porcellus
ENSCPOG00000002961
N
0.736
ythdf3
Danio rerio
ENSDARG00000057939
N
0.736
ENSACAG00000016837
Anolis carolinensis
ENSACAG00000016837
N
0.736
ENSCHOG00000010194
Choloepus hoffmanni
ENSCHOG00000010194
N
0.736
Ame_R018798
Ailuropoda melanoleuca
Ame_R018798
N
0.736
ENSTRUG00000005049
Takifugu rubripes
ENSTRUG00000005049
N
0.725
ENSOANG00000005053
Ornithorhynchus anatinus
ENSOANG00000005053
N
0.725
ythdf3
Xenopus tropicalis
ENSXETG00000021659
N
0.725
ENSACAG00000005560
Anolis carolinensis
ENSACAG00000005560
N
0.725
ENSMGAG00000006139
Meleagris gallopavo
ENSMGAG00000006139
N
0.725
YTHDF1
Ochotona princeps
ENSOPRG00000001758
N
0.725
YTHDF2
Meleagris gallopavo
ENSMGAG00000001610
N
0.725
YTHDF2
Anolis carolinensis
ENSACAG00000010846
N
0.725
ENSORLG00000009739
Oryzias latipes
ENSORLG00000009739
N
0.725
ENSORLG00000008640
Oryzias latipes
ENSORLG00000008640
N
0.725
ENSTNIG00000003975
Tetraodon nigroviridis
ENSTNIG00000003975
N
0.725
YTHDF1
Taeniopygia guttata
ENSTGUG00000007565
N
0.725
ENSOANG00000003723
Ornithorhynchus anatinus
ENSOANG00000003723
N
0.725
LOC419583
Gallus gallus
ENSGALG00000000959
N
0.725
ENSGACG00000002998
Gasterosteus aculeatus
ENSGACG00000002998
N
0.725
ENSGACG00000002613
Gasterosteus aculeatus
ENSGACG00000002613
N
0.725
ythdf1
Danio rerio
ENSDARG00000016447
N
0.725
Q5ZME7_CHICK
Gallus gallus
ENSGALG00000005745
N
0.725
YTHDF2
Pteropus vampyrus
ENSPVAG00000017224
N
0.714
YTHDF1
Tursiops truncatus
ENSTTRG00000001804
N
0.714
YTHDF2
Tursiops truncatus
ENSTTRG00000013603
N
0.714
YTHD2_BOVIN
Bos taurus
ENSBTAG00000015771
N
0.714
Ythdf1
Rattus norvegicus
ENSRNOG00000027015
N
0.714
ENSGACG00000012014
Gasterosteus aculeatus
ENSGACG00000012014
N
0.714
YTHDF2
Canis familiaris
ENSCAFG00000011700
N
0.714
YTHDF2
Microcebus murinus
ENSMICG00000003729
N
0.714
YTHDF2
Choloepus hoffmanni
ENSCHOG00000000357
N
0.714
YTHDF1
Canis familiaris
ENSCAFG00000012772
N
0.714
XR_023164.1
Pan troglodytes
ENSPTRG00000000439
N
0.714
YTHDF2
Sorex araneus
ENSSARG00000001187
N
0.714
Ame_R014316
Ailuropoda melanoleuca
Ame_R014316
N
0.714
YTHDF2
Echinops telfairi
ENSETEG00000017614
N
0.714
ENSTRUG00000004288
Takifugu rubripes
ENSTRUG00000004288
N
0.714
AAH81017
Xenopus laevis
AAH81017
N
0.714
YTHDF2
Tarsius syrichta
ENSTSYG00000004178
N
0.714
YTHDF1
Erinaceus europaeus
ENSEEUG00000007461
N
0.714
YTHDF2
Felis catus
ENSFCAG00000012446
N
0.714
LOC100070667
Equus caballus
ENSECAG00000023108
N
0.714
YTHDF2
Cavia porcellus
ENSCPOG00000019907
N
0.714
YTHDF2
Homo sapiens
ENSG00000198492
N
0.714
LOC100060217
Equus caballus
ENSECAG00000019475
N
0.714
YTHDF2
Taeniopygia guttata
ENSTGUG00000017347
N
0.714
YTHDF2
Procavia capensis
ENSPCAG00000007587
N
0.714
YTHDF1
Procavia capensis
ENSPCAG00000002452
N
0.714
Ythdf1
Mus musculus
ENSMUSG00000038848
N
0.714
ENSMODG00000016842
Monodelphis domestica
ENSMODG00000016842
N
0.714
Ythdf2
Mus musculus
ENSMUSG00000040025
N
0.714
YTHDF2
Callithrix jacchus
ENSCJAG00000009804
N
0.714
YTHDF2
Erinaceus europaeus
ENSEEUG00000011398
N
0.714
YTHDF2
Monodelphis domestica
ENSMODG00000010973
N
0.714
Ame_R001131
Ailuropoda melanoleuca
Ame_R001131
N
0.714
YTHDF2
Myotis lucifugus
ENSMLUG00000012606
N
0.714
YTHDF2
Loxodonta africana
ENSLAFG00000030451
N
0.714
YTHDF1
Cavia porcellus
ENSCPOG00000010202
N
0.714
YTHDF2
Macaca mulatta
ENSMMUG00000011391
N
0.714
YTHDF1
Loxodonta africana
ENSLAFG00000008884
N
0.714
YTHDF2
Ornithorhynchus anatinus
ENSOANG00000006124
N
0.714
YTHDF2
Ochotona princeps
ENSOPRG00000017111
N
0.714
Ythdf2
Dipodomys ordii
ENSDORG00000016564
N
0.714
YTHDF2
Macropus eugenii
ENSMEUG00000016488
N
0.714
ENSORLG00000014665
Oryzias latipes
ENSORLG00000014665
N
0.714
YTHDF1
Myotis lucifugus
ENSMLUG00000002241
N
0.714
YTHDF2
Otolemur garnettii
ENSOGAG00000014648
N
0.714
YTHDF2
Gorilla gorilla
ENSGGOG00000024069
N
0.714
YTHDF2
Oryctolagus cuniculus
ENSOCUG00000010612
N
0.714
YTHDF1
Oryctolagus cuniculus
ENSOCUG00000012780
N
0.714
ythdf2
Xenopus tropicalis
ENSXETG00000020636
N
0.703
ythdf1
Xenopus tropicalis
ENSXETG00000027086
N
0.703
YTHDF1
Macaca mulatta
ENSMMUG00000009227
N
0.703
Ythdf1
Dipodomys ordii
ENSDORG00000002879
N
0.703
A6MKQ0_CALJA
Callithrix jacchus
ENSCJAG00000010056
N
0.703
YTHDF1
Bos taurus
ENSBTAG00000010383
N
0.703
AAH78013
Xenopus laevis
AAH78013
N
0.703
YTHDF1
Homo sapiens
ENSG00000149658
N
0.703
YTHDF1
Gorilla gorilla
ENSGGOG00000008340
N
0.703
YTHDF1
Pan troglodytes
ENSPTRG00000013730
N
0.703
ENSPPYG00000011226
Pongo pygmaeus
ENSPPYG00000011226
N
0.703
YTHDF1
Otolemur garnettii
ENSOGAG00000000480
N
0.703
AAH60445
Xenopus laevis
AAH60445
N
0.703
YTHDF1
Pteropus vampyrus
ENSPVAG00000017568
N
0.703