CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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YTHDF1
(
Ochotona princeps
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
ENSOPRG00000001758
T62101_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOPRP00000001619
YTH
405
495
LLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLRVIASY
Links
Other
YTH
family RBPs
Other
Ochotona princeps
RBPs
154 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
YTHDF1
Cavia porcellus
ENSCPOG00000010202
N
0.989
YTHDF1
Loxodonta africana
ENSLAFG00000008884
N
0.978
LOC100060217
Equus caballus
ENSECAG00000019475
N
0.978
YTHDF1
Tursiops truncatus
ENSTTRG00000001804
N
0.978
YTHDF1
Myotis lucifugus
ENSMLUG00000002241
N
0.978
YTHDF1
Canis familiaris
ENSCAFG00000012772
N
0.978
Ythdf1
Rattus norvegicus
ENSRNOG00000027015
N
0.978
Ythdf1
Mus musculus
ENSMUSG00000038848
N
0.978
YTHDF1
Erinaceus europaeus
ENSEEUG00000007461
N
0.978
YTHDF1
Procavia capensis
ENSPCAG00000002452
N
0.978
YTHDF1
Taeniopygia guttata
ENSTGUG00000007565
N
0.967
A6MKQ0_CALJA
Callithrix jacchus
ENSCJAG00000010056
N
0.967
YTHDF1
Oryctolagus cuniculus
ENSOCUG00000012780
N
0.967
Q5ZME7_CHICK
Gallus gallus
ENSGALG00000005745
N
0.967
Ame_R014316
Ailuropoda melanoleuca
Ame_R014316
N
0.967
ENSOANG00000003723
Ornithorhynchus anatinus
ENSOANG00000003723
N
0.967
YTHDF1
Bos taurus
ENSBTAG00000010383
N
0.967
YTHDF1
Macaca mulatta
ENSMMUG00000009227
N
0.967
ENSPPYG00000011226
Pongo pygmaeus
ENSPPYG00000011226
N
0.967
YTHDF1
Pteropus vampyrus
ENSPVAG00000017568
N
0.967
ENSMGAG00000006139
Meleagris gallopavo
ENSMGAG00000006139
N
0.967
YTHDF1
Homo sapiens
ENSG00000149658
N
0.956
YTHDF1
Gorilla gorilla
ENSGGOG00000008340
N
0.956
YTHDF1
Otolemur garnettii
ENSOGAG00000000480
N
0.956
ENSACAG00000005560
Anolis carolinensis
ENSACAG00000005560
N
0.956
ENSMODG00000016842
Monodelphis domestica
ENSMODG00000016842
N
0.956
YTHDF1
Pan troglodytes
ENSPTRG00000013730
N
0.956
ythdf1
Xenopus tropicalis
ENSXETG00000027086
N
0.945
Ythdf1
Dipodomys ordii
ENSDORG00000002879
N
0.945
AAH60445
Xenopus laevis
AAH60445
N
0.945
ENSMODG00000008255
Monodelphis domestica
ENSMODG00000008255
N
0.912
ENSORLG00000009739
Oryzias latipes
ENSORLG00000009739
N
0.912
ythdf1
Danio rerio
ENSDARG00000016447
N
0.912
Q5ZLM1_CHICK
Gallus gallus
ENSGALG00000015505
N
0.912
YTHDF3
Taeniopygia guttata
ENSTGUG00000011243
N
0.912
LOC776373
Gallus gallus
ENSGALG00000019473
N
0.912
ENSMEUG00000011285
Macropus eugenii
ENSMEUG00000011285
N
0.912
ENSGACG00000002613
Gasterosteus aculeatus
ENSGACG00000002613
N
0.912
ENSGACG00000012014
Gasterosteus aculeatus
ENSGACG00000012014
N
0.912
ENSMGAG00000011168
Meleagris gallopavo
ENSMGAG00000011168
N
0.912
ENSTNIG00000003975
Tetraodon nigroviridis
ENSTNIG00000003975
N
0.912
ENSACAG00000016837
Anolis carolinensis
ENSACAG00000016837
N
0.912
ENSTRUG00000004288
Takifugu rubripes
ENSTRUG00000004288
N
0.912
ENSTNIG00000012698
Tetraodon nigroviridis
ENSTNIG00000012698
N
0.912
ENSTRUG00000005049
Takifugu rubripes
ENSTRUG00000005049
N
0.912
YTHDF2
Loxodonta africana
ENSLAFG00000030451
N
0.901
YTHDF2
Canis familiaris
ENSCAFG00000011700
N
0.901
ENSCAFG00000007215
Canis familiaris
ENSCAFG00000007215
N
0.901
YTHDF2
Macaca mulatta
ENSMMUG00000011391
N
0.901
YTHDF2
Ochotona princeps
ENSOPRG00000017111
N
0.901
YTHDF3
Bos taurus
ENSBTAG00000018557
N
0.901
YTHD2_BOVIN
Bos taurus
ENSBTAG00000015771
N
0.901
ythdf3
Danio rerio
ENSDARG00000057939
N
0.901
YTHDF2
Echinops telfairi
ENSETEG00000017614
N
0.901
ENSETEG00000007144
Echinops telfairi
ENSETEG00000007144
N
0.901
YTHDF2
Erinaceus europaeus
ENSEEUG00000011398
N
0.901
YTHDF2
Felis catus
ENSFCAG00000012446
N
0.901
ENSG00000185728
Homo sapiens
ENSG00000185728
N
0.901
ENSGGOG00000027681
Gorilla gorilla
ENSGGOG00000027681
N
0.901
YTHDF2
Gorilla gorilla
ENSGGOG00000024069
N
0.901
YTHDF2
Homo sapiens
ENSG00000198492
N
0.901
LOC100070667
Equus caballus
ENSECAG00000023108
N
0.901
Ythdf2
Dipodomys ordii
ENSDORG00000016564
N
0.901
YTHDF2
Callithrix jacchus
ENSCJAG00000009804
N
0.901
YTHDF3
Callithrix jacchus
ENSCJAG00000009217
N
0.901
ENSCHOG00000010194
Choloepus hoffmanni
ENSCHOG00000010194
N
0.901
ENSCPOG00000002961
Cavia porcellus
ENSCPOG00000002961
N
0.901
YTHDF2
Cavia porcellus
ENSCPOG00000019907
N
0.901
Ythdf3
Dipodomys ordii
ENSDORG00000014699
N
0.901
AAH81017
Xenopus laevis
AAH81017
N
0.901
ENSLAFG00000016052
Loxodonta africana
ENSLAFG00000016052
N
0.901
YTHDF2
Choloepus hoffmanni
ENSCHOG00000000357
N
0.901
Ame_R001131
Ailuropoda melanoleuca
Ame_R001131
N
0.901
ENSTRUG00000007870
Takifugu rubripes
ENSTRUG00000007870
N
0.901
ENSTBEG00000005747
Tupaia belangeri
ENSTBEG00000005747
N
0.901
ENSSARG00000007626
Sorex araneus
ENSSARG00000007626
N
0.901
YTHDF2
Tarsius syrichta
ENSTSYG00000004178
N
0.901
ENSTSYG00000009117
Tarsius syrichta
ENSTSYG00000009117
N
0.901
ythdf3
Xenopus tropicalis
ENSXETG00000021659
N
0.901
ENSVPAG00000008104
Vicugna pacos
ENSVPAG00000008104
N
0.901
YTHDF2
Tursiops truncatus
ENSTTRG00000013603
N
0.901
YTHDF2
Sorex araneus
ENSSARG00000001187
N
0.901
Ythdf3
Rattus norvegicus
ENSRNOG00000010084
N
0.901
ENSPCAG00000016282
Procavia capensis
ENSPCAG00000016282
N
0.901
YTHDF2
Procavia capensis
ENSPCAG00000007587
N
0.901
ENSORLG00000014665
Oryzias latipes
ENSORLG00000014665
N
0.901
ENSPPYG00000018626
Pongo pygmaeus
ENSPPYG00000018626
N
0.901
XR_023164.1
Pan troglodytes
ENSPTRG00000000439
N
0.901
YTHDF2
Pteropus vampyrus
ENSPVAG00000017224
N
0.901
ENSPVAG00000002740
Pteropus vampyrus
ENSPVAG00000002740
N
0.901
XR_024462.1
Pan troglodytes
ENSPTRG00000030993
N
0.901
YTHDF2
Otolemur garnettii
ENSOGAG00000014648
N
0.901
ENSTTRG00000014564
Tursiops truncatus
ENSTTRG00000014564
N
0.901
YTHDF2
Monodelphis domestica
ENSMODG00000010973
N
0.901
Ythdf3
Mus musculus
ENSMUSG00000047213
N
0.901
Ythdf2
Mus musculus
ENSMUSG00000040025
N
0.901
Ame_R018798
Ailuropoda melanoleuca
Ame_R018798
N
0.901
YTHDF2
Oryctolagus cuniculus
ENSOCUG00000010612
N
0.901
YTHDF2
Myotis lucifugus
ENSMLUG00000012606
N
0.901
YTHDF2
Macropus eugenii
ENSMEUG00000016488
N
0.901
ENSOANG00000005053
Ornithorhynchus anatinus
ENSOANG00000005053
N
0.901
ENSOCUG00000008723
Oryctolagus cuniculus
ENSOCUG00000008723
N
0.901
ENSMMUG00000006729
Macaca mulatta
ENSMMUG00000006729
N
0.901
ENSMICG00000009379
Microcebus murinus
ENSMICG00000009379
N
0.901
YTHDF2
Microcebus murinus
ENSMICG00000003729
N
0.901
ENSORLG00000008640
Oryzias latipes
ENSORLG00000008640
N
0.890
ENSGACG00000002998
Gasterosteus aculeatus
ENSGACG00000002998
N
0.890
LOC419583
Gallus gallus
ENSGALG00000000959
N
0.890
YTHDF2
Anolis carolinensis
ENSACAG00000010846
N
0.890
YTHDF2
Meleagris gallopavo
ENSMGAG00000001610
N
0.890
AAH78013
Xenopus laevis
AAH78013
N
0.890
YTHDF2
Taeniopygia guttata
ENSTGUG00000017347
N
0.890
ythdf2
Xenopus tropicalis
ENSXETG00000020636
N
0.890
yth2
Danio rerio
ENSDARG00000014498
N
0.879
YTHDF2
Ornithorhynchus anatinus
ENSOANG00000006124
N
0.879
YTHDF2
Oryzias latipes
ENSORLG00000014323
N
0.879
AAH68959
Xenopus laevis
AAH68959
N
0.879
YTHDF2
Takifugu rubripes
ENSTRUG00000011923
N
0.879
ENSTNIG00000012490
Tetraodon nigroviridis
ENSTNIG00000012490
N
0.879
YTHDF2
Gasterosteus aculeatus
ENSGACG00000009603
N
0.879
YTHDF2
Tetraodon nigroviridis
ENSTNIG00000017263
N
0.868
estExt_fgenesh1_pm.C_4090006
Capitella teleta
estExt_fgenesh1_pm.C_4090006
N
0.780
e_gw.462.3.1
Branchiostoma floridae
e_gw.462.3.1
N
0.780
ENSCING00000004166
Ciona intestinalis
ENSCING00000004166
N
0.780
XP_001187433.1
Strongylocentrotus purpuratus
XP_001187433.1
N
0.769
ENSCSAVG00000010987
Ciona savignyi
ENSCSAVG00000010987
N
0.769
152141
Helobdella robusta
152141
N
0.769
XP_786921.2
Strongylocentrotus purpuratus
XP_786921.2
N
0.769
DGIL_AUG5s6515g6t1
Acyrtosiphon pisum
DGIL_AUG5s6515g6t1
N
0.769
PHUM167190
Pediculus humanus
PHUM167190
N
0.758
e_gw.90.29.1
Nematostella vectensis
e_gw.90.29.1
N
0.758
Aqu1.220420
Amphimedon queenslandica
Aqu1.220420
N
0.747
XP_002161951.1
Hydra magnipapillata
XP_002161951.1
N
0.736
62837
Helobdella robusta
62837
N
0.736
BGIBMGA007551
Bombyx mori
BGIBMGA007551
N
0.736
XP_002156821.1
Hydra magnipapillata
XP_002156821.1
N
0.736
nasonia_NCBI_hmm250744
Nasonia vitripennis
nasonia_NCBI_hmm250744
N
0.725
GK12904
Drosophila willistoni
FBgn0214913
N
0.725
GA19581-RA
Drosophila pseudoobscura
FBgn0079577
N
0.725
GL21952
Drosophila persimilis
FBgn0159545
N
0.725
Smp_040460
Schistosoma mansoni
Smp_040460
N
0.725
amel4_ncbi_hmm12284
Tribolium castaneum
amel4_ncbi_hmm12284
N
0.725
amel4_ncbi_hmm12284
Apis mellifera
amel4_ncbi_hmm12284
N
0.725
GF18592
Drosophila ananassae
FBgn0095610
N
0.714
GM17761
Drosophila sechellia
FBgn0172669
N
0.714
GD18245
Drosophila simulans
FBgn0189779
N
0.714
GE10748
Drosophila yakuba
FBgn0228591
N
0.714
CG6422
Drosophila melanogaster
FBgn0039261
N
0.714
Sjc_0086280
Schistosoma japonicum
Sjc_0086280
N
0.714
GG12295
Drosophila erecta
FBgn0104586
N
0.714
GJ14120
Drosophila virilis
FBgn0201338
N
0.703
ENSMMUG00000029888
Macaca mulatta
ENSMMUG00000029888
N
0.703
AGAP003817
Anopheles gambiae
AGAP003817
N
0.703
GH22368
Drosophila grimshawi
FBgn0129826
N
0.703