CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Sjc_0086280
(
Schistosoma japonicum
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
Sjc_0086280
T62461_0.6
SDSPB (2008-Sep-5)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CPRT0000008119
YTH
665
755
LFFSVNGSGHFCGMAEMVSRVDYNARASVWAQDKWQGKFSVRWIFVKDVPNTALRHIRIETNDNKPVTHSRDTTELPLERGRQVMEVLATY
Links
Other
YTH
family RBPs
Other
Schistosoma japonicum
RBPs
112 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Smp_040460
Schistosoma mansoni
Smp_040460
N
0.989
ENSPVAG00000002740
Pteropus vampyrus
ENSPVAG00000002740
N
0.725
ENSMICG00000009379
Microcebus murinus
ENSMICG00000009379
N
0.725
ENSMGAG00000011168
Meleagris gallopavo
ENSMGAG00000011168
N
0.725
ENSTNIG00000012698
Tetraodon nigroviridis
ENSTNIG00000012698
N
0.725
Ythdf3
Dipodomys ordii
ENSDORG00000014699
N
0.725
ythdf3
Danio rerio
ENSDARG00000057939
N
0.725
ENSMMUG00000006729
Macaca mulatta
ENSMMUG00000006729
N
0.725
ENSTRUG00000007870
Takifugu rubripes
ENSTRUG00000007870
N
0.725
XR_024462.1
Pan troglodytes
ENSPTRG00000030993
N
0.725
ENSETEG00000007144
Echinops telfairi
ENSETEG00000007144
N
0.725
YTHDF3
Taeniopygia guttata
ENSTGUG00000011243
N
0.725
ENSSARG00000007626
Sorex araneus
ENSSARG00000007626
N
0.725
ENSGGOG00000027681
Gorilla gorilla
ENSGGOG00000027681
N
0.725
LOC776373
Gallus gallus
ENSGALG00000019473
N
0.725
ENSTBEG00000005747
Tupaia belangeri
ENSTBEG00000005747
N
0.725
ENSLAFG00000016052
Loxodonta africana
ENSLAFG00000016052
N
0.725
ENSG00000185728
Homo sapiens
ENSG00000185728
N
0.725
ENSMEUG00000011285
Macropus eugenii
ENSMEUG00000011285
N
0.725
Ythdf3
Rattus norvegicus
ENSRNOG00000010084
N
0.725
Q5ZLM1_CHICK
Gallus gallus
ENSGALG00000015505
N
0.725
ENSPPYG00000018626
Pongo pygmaeus
ENSPPYG00000018626
N
0.725
Ythdf3
Mus musculus
ENSMUSG00000047213
N
0.725
ENSCPOG00000002961
Cavia porcellus
ENSCPOG00000002961
N
0.725
ENSACAG00000016837
Anolis carolinensis
ENSACAG00000016837
N
0.725
ENSOCUG00000008723
Oryctolagus cuniculus
ENSOCUG00000008723
N
0.725
estExt_fgenesh1_pm.C_4090006
Capitella teleta
estExt_fgenesh1_pm.C_4090006
N
0.725
Ame_R018798
Ailuropoda melanoleuca
Ame_R018798
N
0.725
YTHDF3
Bos taurus
ENSBTAG00000018557
N
0.725
ENSVPAG00000008104
Vicugna pacos
ENSVPAG00000008104
N
0.725
ENSCAFG00000007215
Canis familiaris
ENSCAFG00000007215
N
0.725
ENSCHOG00000010194
Choloepus hoffmanni
ENSCHOG00000010194
N
0.725
ENSMODG00000008255
Monodelphis domestica
ENSMODG00000008255
N
0.725
ENSPCAG00000016282
Procavia capensis
ENSPCAG00000016282
N
0.725
ENSTSYG00000009117
Tarsius syrichta
ENSTSYG00000009117
N
0.725
ENSTTRG00000014564
Tursiops truncatus
ENSTTRG00000014564
N
0.725
YTHDF3
Callithrix jacchus
ENSCJAG00000009217
N
0.725
ENSORLG00000008640
Oryzias latipes
ENSORLG00000008640
N
0.714
ENSORLG00000009739
Oryzias latipes
ENSORLG00000009739
N
0.714
ENSOANG00000003723
Ornithorhynchus anatinus
ENSOANG00000003723
N
0.714
ENSMGAG00000006139
Meleagris gallopavo
ENSMGAG00000006139
N
0.714
YTHDF2
Meleagris gallopavo
ENSMGAG00000001610
N
0.714
ENSOANG00000005053
Ornithorhynchus anatinus
ENSOANG00000005053
N
0.714
YTHDF1
Taeniopygia guttata
ENSTGUG00000007565
N
0.714
ENSTRUG00000005049
Takifugu rubripes
ENSTRUG00000005049
N
0.714
ENSACAG00000005560
Anolis carolinensis
ENSACAG00000005560
N
0.714
ythdf1
Danio rerio
ENSDARG00000016447
N
0.714
Q5ZME7_CHICK
Gallus gallus
ENSGALG00000005745
N
0.714
YTHDF1
Bos taurus
ENSBTAG00000010383
N
0.714
YTHDF2
Anolis carolinensis
ENSACAG00000010846
N
0.714
ythdf2
Xenopus tropicalis
ENSXETG00000020636
N
0.714
ENSTNIG00000003975
Tetraodon nigroviridis
ENSTNIG00000003975
N
0.714
AAH78013
Xenopus laevis
AAH78013
N
0.714
ythdf3
Xenopus tropicalis
ENSXETG00000021659
N
0.714
LOC419583
Gallus gallus
ENSGALG00000000959
N
0.714
ENSGACG00000002613
Gasterosteus aculeatus
ENSGACG00000002613
N
0.714
ENSGACG00000002998
Gasterosteus aculeatus
ENSGACG00000002998
N
0.714
YTHDF1
Ochotona princeps
ENSOPRG00000001758
N
0.714
YTHDF1
Procavia capensis
ENSPCAG00000002452
N
0.703
ENSORLG00000014665
Oryzias latipes
ENSORLG00000014665
N
0.703
YTHDF2
Procavia capensis
ENSPCAG00000007587
N
0.703
YTHDF2
Oryzias latipes
ENSORLG00000014323
N
0.703
YTHDF2
Ochotona princeps
ENSOPRG00000017111
N
0.703
XR_023164.1
Pan troglodytes
ENSPTRG00000000439
N
0.703
YTHDF2
Taeniopygia guttata
ENSTGUG00000017347
N
0.703
YTHDF2
Pteropus vampyrus
ENSPVAG00000017224
N
0.703
Ythdf1
Rattus norvegicus
ENSRNOG00000027015
N
0.703
YTHDF2
Sorex araneus
ENSSARG00000001187
N
0.703
YTHDF2
Tetraodon nigroviridis
ENSTNIG00000017263
N
0.703
ENSTRUG00000004288
Takifugu rubripes
ENSTRUG00000004288
N
0.703
YTHDF1
Tursiops truncatus
ENSTTRG00000001804
N
0.703
YTHDF2
Tarsius syrichta
ENSTSYG00000004178
N
0.703
YTHDF2
Takifugu rubripes
ENSTRUG00000011923
N
0.703
YTHDF2
Tursiops truncatus
ENSTTRG00000013603
N
0.703
YTHDF2
Microcebus murinus
ENSMICG00000003729
N
0.703
Ythdf2
Dipodomys ordii
ENSDORG00000016564
N
0.703
yth2
Danio rerio
ENSDARG00000014498
N
0.703
YTHDF2
Cavia porcellus
ENSCPOG00000019907
N
0.703
LOC100060217
Equus caballus
ENSECAG00000019475
N
0.703
LOC100070667
Equus caballus
ENSECAG00000023108
N
0.703
YTHDF2
Echinops telfairi
ENSETEG00000017614
N
0.703
YTHDF2
Erinaceus europaeus
ENSEEUG00000011398
N
0.703
YTHDF1
Erinaceus europaeus
ENSEEUG00000007461
N
0.703
YTHDF1
Cavia porcellus
ENSCPOG00000010202
N
0.703
YTHDF2
Callithrix jacchus
ENSCJAG00000009804
N
0.703
AAH81017
Xenopus laevis
AAH81017
N
0.703
AAH68959
Xenopus laevis
AAH68959
N
0.703
Ame_R014316
Ailuropoda melanoleuca
Ame_R014316
N
0.703
YTHD2_BOVIN
Bos taurus
ENSBTAG00000015771
N
0.703
YTHDF2
Canis familiaris
ENSCAFG00000011700
N
0.703
YTHDF2
Choloepus hoffmanni
ENSCHOG00000000357
N
0.703
YTHDF1
Canis familiaris
ENSCAFG00000012772
N
0.703
YTHDF2
Felis catus
ENSFCAG00000012446
N
0.703
YTHDF2
Homo sapiens
ENSG00000198492
N
0.703
ENSMODG00000016842
Monodelphis domestica
ENSMODG00000016842
N
0.703
YTHDF2
Monodelphis domestica
ENSMODG00000010973
N
0.703
YTHDF2
Macaca mulatta
ENSMMUG00000011391
N
0.703
Ythdf1
Mus musculus
ENSMUSG00000038848
N
0.703
Ythdf2
Mus musculus
ENSMUSG00000040025
N
0.703
YTHDF1
Oryctolagus cuniculus
ENSOCUG00000012780
N
0.703
YTHDF2
Oryctolagus cuniculus
ENSOCUG00000010612
N
0.703
YTHDF2
Ornithorhynchus anatinus
ENSOANG00000006124
N
0.703
YTHDF2
Myotis lucifugus
ENSMLUG00000012606
N
0.703
YTHDF1
Myotis lucifugus
ENSMLUG00000002241
N
0.703
YTHDF2
Gorilla gorilla
ENSGGOG00000024069
N
0.703
ENSGACG00000012014
Gasterosteus aculeatus
ENSGACG00000012014
N
0.703
YTHDF2
Gasterosteus aculeatus
ENSGACG00000009603
N
0.703
YTHDF1
Loxodonta africana
ENSLAFG00000008884
N
0.703
YTHDF2
Loxodonta africana
ENSLAFG00000030451
N
0.703
Ame_R001131
Ailuropoda melanoleuca
Ame_R001131
N
0.703
YTHDF2
Macropus eugenii
ENSMEUG00000016488
N
0.703
YTHDF2
Otolemur garnettii
ENSOGAG00000014648
N
0.703