CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ythdf1
(
Xenopus tropicalis
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
ENSXETG00000027086
T62177_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSXETP00000056774
YTH
425
515
LLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVKWLFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKLVLKIIATY
Links
Other
YTH
family RBPs
Other
Xenopus tropicalis
RBPs
149 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH60445
Xenopus laevis
AAH60445
N
1.000
Q5ZME7_CHICK
Gallus gallus
ENSGALG00000005745
N
0.978
YTHDF1
Taeniopygia guttata
ENSTGUG00000007565
N
0.978
ENSOANG00000003723
Ornithorhynchus anatinus
ENSOANG00000003723
N
0.978
ENSMGAG00000006139
Meleagris gallopavo
ENSMGAG00000006139
N
0.978
YTHDF1
Myotis lucifugus
ENSMLUG00000002241
N
0.967
Ythdf1
Mus musculus
ENSMUSG00000038848
N
0.967
ENSACAG00000005560
Anolis carolinensis
ENSACAG00000005560
N
0.967
LOC100060217
Equus caballus
ENSECAG00000019475
N
0.967
YTHDF1
Canis familiaris
ENSCAFG00000012772
N
0.967
YTHDF1
Erinaceus europaeus
ENSEEUG00000007461
N
0.967
YTHDF1
Loxodonta africana
ENSLAFG00000008884
N
0.967
ENSMODG00000016842
Monodelphis domestica
ENSMODG00000016842
N
0.967
YTHDF1
Tursiops truncatus
ENSTTRG00000001804
N
0.967
YTHDF1
Procavia capensis
ENSPCAG00000002452
N
0.967
Ythdf1
Rattus norvegicus
ENSRNOG00000027015
N
0.967
A6MKQ0_CALJA
Callithrix jacchus
ENSCJAG00000010056
N
0.956
YTHDF1
Macaca mulatta
ENSMMUG00000009227
N
0.956
ENSPPYG00000011226
Pongo pygmaeus
ENSPPYG00000011226
N
0.956
YTHDF1
Pteropus vampyrus
ENSPVAG00000017568
N
0.956
YTHDF1
Cavia porcellus
ENSCPOG00000010202
N
0.956
Ame_R014316
Ailuropoda melanoleuca
Ame_R014316
N
0.956
YTHDF1
Otolemur garnettii
ENSOGAG00000000480
N
0.945
ENSORLG00000009739
Oryzias latipes
ENSORLG00000009739
N
0.945
YTHDF1
Gorilla gorilla
ENSGGOG00000008340
N
0.945
ENSTRUG00000005049
Takifugu rubripes
ENSTRUG00000005049
N
0.945
ENSGACG00000002613
Gasterosteus aculeatus
ENSGACG00000002613
N
0.945
ENSTNIG00000003975
Tetraodon nigroviridis
ENSTNIG00000003975
N
0.945
YTHDF1
Ochotona princeps
ENSOPRG00000001758
N
0.945
ythdf1
Danio rerio
ENSDARG00000016447
N
0.945
YTHDF1
Pan troglodytes
ENSPTRG00000013730
N
0.945
YTHDF1
Homo sapiens
ENSG00000149658
N
0.945
ENSGACG00000012014
Gasterosteus aculeatus
ENSGACG00000012014
N
0.934
YTHDF1
Bos taurus
ENSBTAG00000010383
N
0.934
YTHDF1
Oryctolagus cuniculus
ENSOCUG00000012780
N
0.934
Ythdf1
Dipodomys ordii
ENSDORG00000002879
N
0.934
ENSTRUG00000004288
Takifugu rubripes
ENSTRUG00000004288
N
0.934
ythdf3
Xenopus tropicalis
ENSXETG00000021659
N
0.923
YTHDF3
Taeniopygia guttata
ENSTGUG00000011243
N
0.923
ENSMODG00000008255
Monodelphis domestica
ENSMODG00000008255
N
0.923
ENSOANG00000005053
Ornithorhynchus anatinus
ENSOANG00000005053
N
0.923
ENSMGAG00000011168
Meleagris gallopavo
ENSMGAG00000011168
N
0.923
ENSORLG00000014665
Oryzias latipes
ENSORLG00000014665
N
0.923
ENSMEUG00000011285
Macropus eugenii
ENSMEUG00000011285
N
0.923
Q5ZLM1_CHICK
Gallus gallus
ENSGALG00000015505
N
0.923
LOC776373
Gallus gallus
ENSGALG00000019473
N
0.923
ENSACAG00000016837
Anolis carolinensis
ENSACAG00000016837
N
0.923
ENSGACG00000002998
Gasterosteus aculeatus
ENSGACG00000002998
N
0.912
ENSTRUG00000007870
Takifugu rubripes
ENSTRUG00000007870
N
0.912
YTHDF3
Bos taurus
ENSBTAG00000018557
N
0.912
Ythdf3
Mus musculus
ENSMUSG00000047213
N
0.912
ENSCAFG00000007215
Canis familiaris
ENSCAFG00000007215
N
0.912
ENSG00000185728
Homo sapiens
ENSG00000185728
N
0.912
ENSMMUG00000006729
Macaca mulatta
ENSMMUG00000006729
N
0.912
ENSLAFG00000016052
Loxodonta africana
ENSLAFG00000016052
N
0.912
XR_024462.1
Pan troglodytes
ENSPTRG00000030993
N
0.912
ENSGGOG00000027681
Gorilla gorilla
ENSGGOG00000027681
N
0.912
AAH81017
Xenopus laevis
AAH81017
N
0.912
ENSTTRG00000014564
Tursiops truncatus
ENSTTRG00000014564
N
0.912
ENSMICG00000009379
Microcebus murinus
ENSMICG00000009379
N
0.912
ENSTSYG00000009117
Tarsius syrichta
ENSTSYG00000009117
N
0.912
Ame_R018798
Ailuropoda melanoleuca
Ame_R018798
N
0.912
ENSPCAG00000016282
Procavia capensis
ENSPCAG00000016282
N
0.912
ENSVPAG00000008104
Vicugna pacos
ENSVPAG00000008104
N
0.912
ythdf3
Danio rerio
ENSDARG00000057939
N
0.912
ENSPPYG00000018626
Pongo pygmaeus
ENSPPYG00000018626
N
0.912
ENSPVAG00000002740
Pteropus vampyrus
ENSPVAG00000002740
N
0.912
ENSCPOG00000002961
Cavia porcellus
ENSCPOG00000002961
N
0.912
YTHDF3
Callithrix jacchus
ENSCJAG00000009217
N
0.912
ENSCHOG00000010194
Choloepus hoffmanni
ENSCHOG00000010194
N
0.912
Ythdf3
Dipodomys ordii
ENSDORG00000014699
N
0.912
ENSTBEG00000005747
Tupaia belangeri
ENSTBEG00000005747
N
0.912
ENSOCUG00000008723
Oryctolagus cuniculus
ENSOCUG00000008723
N
0.912
ENSETEG00000007144
Echinops telfairi
ENSETEG00000007144
N
0.912
ENSSARG00000007626
Sorex araneus
ENSSARG00000007626
N
0.912
Ythdf3
Rattus norvegicus
ENSRNOG00000010084
N
0.912
ENSTNIG00000012490
Tetraodon nigroviridis
ENSTNIG00000012490
N
0.901
YTHDF2
Taeniopygia guttata
ENSTGUG00000017347
N
0.901
ENSTNIG00000012698
Tetraodon nigroviridis
ENSTNIG00000012698
N
0.901
YTHDF2
Meleagris gallopavo
ENSMGAG00000001610
N
0.901
LOC419583
Gallus gallus
ENSGALG00000000959
N
0.901
YTHDF2
Anolis carolinensis
ENSACAG00000010846
N
0.901
LOC100070667
Equus caballus
ENSECAG00000023108
N
0.890
YTHDF2
Ochotona princeps
ENSOPRG00000017111
N
0.890
YTHDF2
Otolemur garnettii
ENSOGAG00000014648
N
0.890
Ame_R001131
Ailuropoda melanoleuca
Ame_R001131
N
0.890
YTHDF2
Echinops telfairi
ENSETEG00000017614
N
0.890
YTHDF2
Erinaceus europaeus
ENSEEUG00000011398
N
0.890
YTHDF2
Oryctolagus cuniculus
ENSOCUG00000010612
N
0.890
YTHDF2
Canis familiaris
ENSCAFG00000011700
N
0.890
ENSORLG00000008640
Oryzias latipes
ENSORLG00000008640
N
0.890
YTHDF2
Pteropus vampyrus
ENSPVAG00000017224
N
0.890
XR_023164.1
Pan troglodytes
ENSPTRG00000000439
N
0.890
YTHDF2
Cavia porcellus
ENSCPOG00000019907
N
0.890
YTHDF2
Procavia capensis
ENSPCAG00000007587
N
0.890
Ythdf2
Dipodomys ordii
ENSDORG00000016564
N
0.890
YTHDF2
Choloepus hoffmanni
ENSCHOG00000000357
N
0.890
YTHDF2
Sorex araneus
ENSSARG00000001187
N
0.890
YTHDF2
Loxodonta africana
ENSLAFG00000030451
N
0.890
YTHDF2
Felis catus
ENSFCAG00000012446
N
0.890
YTHDF2
Microcebus murinus
ENSMICG00000003729
N
0.890
YTHDF2
Homo sapiens
ENSG00000198492
N
0.890
YTHDF2
Tursiops truncatus
ENSTTRG00000013603
N
0.890
YTHDF2
Gorilla gorilla
ENSGGOG00000024069
N
0.890
YTHDF2
Tarsius syrichta
ENSTSYG00000004178
N
0.890
YTHDF2
Macropus eugenii
ENSMEUG00000016488
N
0.890
YTHDF2
Macaca mulatta
ENSMMUG00000011391
N
0.890
YTHDF2
Myotis lucifugus
ENSMLUG00000012606
N
0.890
YTHDF2
Callithrix jacchus
ENSCJAG00000009804
N
0.890
YTHD2_BOVIN
Bos taurus
ENSBTAG00000015771
N
0.890
Ythdf2
Mus musculus
ENSMUSG00000040025
N
0.890
YTHDF2
Monodelphis domestica
ENSMODG00000010973
N
0.890
ythdf2
Xenopus tropicalis
ENSXETG00000020636
N
0.879
YTHDF2
Gasterosteus aculeatus
ENSGACG00000009603
N
0.879
AAH78013
Xenopus laevis
AAH78013
N
0.879
YTHDF2
Oryzias latipes
ENSORLG00000014323
N
0.879
YTHDF2
Takifugu rubripes
ENSTRUG00000011923
N
0.879
YTHDF2
Ornithorhynchus anatinus
ENSOANG00000006124
N
0.868
AAH68959
Xenopus laevis
AAH68959
N
0.868
yth2
Danio rerio
ENSDARG00000014498
N
0.868
YTHDF2
Tetraodon nigroviridis
ENSTNIG00000017263
N
0.868
XP_001187433.1
Strongylocentrotus purpuratus
XP_001187433.1
N
0.780
XP_786921.2
Strongylocentrotus purpuratus
XP_786921.2
N
0.780
e_gw.462.3.1
Branchiostoma floridae
e_gw.462.3.1
N
0.780
ENSCING00000004166
Ciona intestinalis
ENSCING00000004166
N
0.769
estExt_fgenesh1_pm.C_4090006
Capitella teleta
estExt_fgenesh1_pm.C_4090006
N
0.758
PHUM167190
Pediculus humanus
PHUM167190
N
0.758
e_gw.90.29.1
Nematostella vectensis
e_gw.90.29.1
N
0.758
ENSCSAVG00000010987
Ciona savignyi
ENSCSAVG00000010987
N
0.758
Aqu1.220420
Amphimedon queenslandica
Aqu1.220420
N
0.758
62837
Helobdella robusta
62837
N
0.747
152141
Helobdella robusta
152141
N
0.747
XP_002161951.1
Hydra magnipapillata
XP_002161951.1
N
0.736
DGIL_AUG5s6515g6t1
Acyrtosiphon pisum
DGIL_AUG5s6515g6t1
N
0.736
XP_002156821.1
Hydra magnipapillata
XP_002156821.1
N
0.736
GA19581-RA
Drosophila pseudoobscura
FBgn0079577
N
0.725
amel4_ncbi_hmm12284
Tribolium castaneum
amel4_ncbi_hmm12284
N
0.725
amel4_ncbi_hmm12284
Apis mellifera
amel4_ncbi_hmm12284
N
0.725
GL21952
Drosophila persimilis
FBgn0159545
N
0.725
GK12904
Drosophila willistoni
FBgn0214913
N
0.714
BGIBMGA007551
Bombyx mori
BGIBMGA007551
N
0.714
ENSMMUG00000029888
Macaca mulatta
ENSMMUG00000029888
N
0.714
GE10748
Drosophila yakuba
FBgn0228591
N
0.703
GM17761
Drosophila sechellia
FBgn0172669
N
0.703
CG6422
Drosophila melanogaster
FBgn0039261
N
0.703
GF18592
Drosophila ananassae
FBgn0095610
N
0.703
Smp_040460
Schistosoma mansoni
Smp_040460
N
0.703
GG12295
Drosophila erecta
FBgn0104586
N
0.703
GD18245
Drosophila simulans
FBgn0189779
N
0.703