CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AAH81017
(
Xenopus laevis
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
AAH81017
T62586_0.6
Xenbase (2010-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAH81017
YTH
450
540
LLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFDVKWAFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIAMF
Links
Other
YTH
family RBPs
Other
Xenopus laevis
RBPs
148 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSMEUG00000011285
Macropus eugenii
ENSMEUG00000011285
N
0.978
LOC776373
Gallus gallus
ENSGALG00000019473
N
0.978
ENSMGAG00000011168
Meleagris gallopavo
ENSMGAG00000011168
N
0.978
ENSMODG00000008255
Monodelphis domestica
ENSMODG00000008255
N
0.978
ythdf3
Xenopus tropicalis
ENSXETG00000021659
N
0.978
YTHDF3
Taeniopygia guttata
ENSTGUG00000011243
N
0.978
Q5ZLM1_CHICK
Gallus gallus
ENSGALG00000015505
N
0.978
ENSOANG00000005053
Ornithorhynchus anatinus
ENSOANG00000005053
N
0.978
ENSACAG00000016837
Anolis carolinensis
ENSACAG00000016837
N
0.978
Ythdf3
Dipodomys ordii
ENSDORG00000014699
N
0.967
ENSSARG00000007626
Sorex araneus
ENSSARG00000007626
N
0.967
ENSTBEG00000005747
Tupaia belangeri
ENSTBEG00000005747
N
0.967
Ythdf3
Mus musculus
ENSMUSG00000047213
N
0.967
ENSG00000185728
Homo sapiens
ENSG00000185728
N
0.967
ENSGGOG00000027681
Gorilla gorilla
ENSGGOG00000027681
N
0.967
XR_024462.1
Pan troglodytes
ENSPTRG00000030993
N
0.967
YTHDF3
Bos taurus
ENSBTAG00000018557
N
0.967
ENSETEG00000007144
Echinops telfairi
ENSETEG00000007144
N
0.967
Ythdf3
Rattus norvegicus
ENSRNOG00000010084
N
0.967
ENSOCUG00000008723
Oryctolagus cuniculus
ENSOCUG00000008723
N
0.967
ENSPPYG00000018626
Pongo pygmaeus
ENSPPYG00000018626
N
0.967
ENSLAFG00000016052
Loxodonta africana
ENSLAFG00000016052
N
0.967
ENSCHOG00000010194
Choloepus hoffmanni
ENSCHOG00000010194
N
0.967
ENSMMUG00000006729
Macaca mulatta
ENSMMUG00000006729
N
0.967
Ame_R018798
Ailuropoda melanoleuca
Ame_R018798
N
0.967
ENSMICG00000009379
Microcebus murinus
ENSMICG00000009379
N
0.967
ENSCAFG00000007215
Canis familiaris
ENSCAFG00000007215
N
0.967
YTHDF3
Callithrix jacchus
ENSCJAG00000009217
N
0.967
ENSPCAG00000016282
Procavia capensis
ENSPCAG00000016282
N
0.967
ENSPVAG00000002740
Pteropus vampyrus
ENSPVAG00000002740
N
0.967
ENSTTRG00000014564
Tursiops truncatus
ENSTTRG00000014564
N
0.967
ENSCPOG00000002961
Cavia porcellus
ENSCPOG00000002961
N
0.967
ENSVPAG00000008104
Vicugna pacos
ENSVPAG00000008104
N
0.967
ENSTSYG00000009117
Tarsius syrichta
ENSTSYG00000009117
N
0.967
ythdf3
Danio rerio
ENSDARG00000057939
N
0.956
ENSGACG00000002998
Gasterosteus aculeatus
ENSGACG00000002998
N
0.934
Ythdf1
Mus musculus
ENSMUSG00000038848
N
0.923
Q5ZME7_CHICK
Gallus gallus
ENSGALG00000005745
N
0.923
YTHDF1
Loxodonta africana
ENSLAFG00000008884
N
0.923
ENSORLG00000008640
Oryzias latipes
ENSORLG00000008640
N
0.923
ENSOANG00000003723
Ornithorhynchus anatinus
ENSOANG00000003723
N
0.923
YTHDF1
Erinaceus europaeus
ENSEEUG00000007461
N
0.923
YTHDF1
Taeniopygia guttata
ENSTGUG00000007565
N
0.923
ENSTRUG00000007870
Takifugu rubripes
ENSTRUG00000007870
N
0.923
YTHDF1
Tursiops truncatus
ENSTTRG00000001804
N
0.923
YTHDF1
Canis familiaris
ENSCAFG00000012772
N
0.923
YTHDF1
Procavia capensis
ENSPCAG00000002452
N
0.923
LOC100060217
Equus caballus
ENSECAG00000019475
N
0.923
ENSMGAG00000006139
Meleagris gallopavo
ENSMGAG00000006139
N
0.923
Ythdf1
Rattus norvegicus
ENSRNOG00000027015
N
0.923
YTHDF1
Myotis lucifugus
ENSMLUG00000002241
N
0.923
ENSACAG00000005560
Anolis carolinensis
ENSACAG00000005560
N
0.923
YTHDF1
Macaca mulatta
ENSMMUG00000009227
N
0.912
YTHDF1
Pteropus vampyrus
ENSPVAG00000017568
N
0.912
AAH60445
Xenopus laevis
AAH60445
N
0.912
Ame_R014316
Ailuropoda melanoleuca
Ame_R014316
N
0.912
ythdf1
Xenopus tropicalis
ENSXETG00000027086
N
0.912
ENSPPYG00000011226
Pongo pygmaeus
ENSPPYG00000011226
N
0.912
ENSMODG00000016842
Monodelphis domestica
ENSMODG00000016842
N
0.912
YTHDF1
Oryctolagus cuniculus
ENSOCUG00000012780
N
0.912
A6MKQ0_CALJA
Callithrix jacchus
ENSCJAG00000010056
N
0.912
YTHDF1
Cavia porcellus
ENSCPOG00000010202
N
0.912
Ythdf1
Dipodomys ordii
ENSDORG00000002879
N
0.901
YTHDF1
Otolemur garnettii
ENSOGAG00000000480
N
0.901
YTHDF1
Ochotona princeps
ENSOPRG00000001758
N
0.901
YTHDF1
Pan troglodytes
ENSPTRG00000013730
N
0.901
YTHDF1
Homo sapiens
ENSG00000149658
N
0.901
ENSTNIG00000012698
Tetraodon nigroviridis
ENSTNIG00000012698
N
0.901
YTHDF1
Gorilla gorilla
ENSGGOG00000008340
N
0.901
YTHDF2
Canis familiaris
ENSCAFG00000011700
N
0.890
YTHDF2
Felis catus
ENSFCAG00000012446
N
0.890
YTHDF2
Tursiops truncatus
ENSTTRG00000013603
N
0.890
YTHDF2
Callithrix jacchus
ENSCJAG00000009804
N
0.890
YTHDF2
Choloepus hoffmanni
ENSCHOG00000000357
N
0.890
YTHDF2
Homo sapiens
ENSG00000198492
N
0.890
XR_023164.1
Pan troglodytes
ENSPTRG00000000439
N
0.890
YTHDF2
Pteropus vampyrus
ENSPVAG00000017224
N
0.890
YTHDF2
Echinops telfairi
ENSETEG00000017614
N
0.890
Ythdf2
Dipodomys ordii
ENSDORG00000016564
N
0.890
YTHDF2
Cavia porcellus
ENSCPOG00000019907
N
0.890
YTHDF2
Procavia capensis
ENSPCAG00000007587
N
0.890
YTHDF2
Sorex araneus
ENSSARG00000001187
N
0.890
YTHDF2
Erinaceus europaeus
ENSEEUG00000011398
N
0.890
Ame_R001131
Ailuropoda melanoleuca
Ame_R001131
N
0.890
YTHDF2
Tarsius syrichta
ENSTSYG00000004178
N
0.890
LOC100070667
Equus caballus
ENSECAG00000023108
N
0.890
YTHDF2
Gorilla gorilla
ENSGGOG00000024069
N
0.890
YTHDF2
Monodelphis domestica
ENSMODG00000010973
N
0.890
YTHDF1
Bos taurus
ENSBTAG00000010383
N
0.890
Ythdf2
Mus musculus
ENSMUSG00000040025
N
0.890
YTHDF2
Macaca mulatta
ENSMMUG00000011391
N
0.890
YTHDF2
Macropus eugenii
ENSMEUG00000016488
N
0.890
YTHDF2
Meleagris gallopavo
ENSMGAG00000001610
N
0.890
YTHDF2
Loxodonta africana
ENSLAFG00000030451
N
0.890
YTHDF2
Oryctolagus cuniculus
ENSOCUG00000010612
N
0.890
YTHDF2
Anolis carolinensis
ENSACAG00000010846
N
0.890
YTHD2_BOVIN
Bos taurus
ENSBTAG00000015771
N
0.890
YTHDF2
Microcebus murinus
ENSMICG00000003729
N
0.890
LOC419583
Gallus gallus
ENSGALG00000000959
N
0.890
YTHDF2
Myotis lucifugus
ENSMLUG00000012606
N
0.890
YTHDF2
Ochotona princeps
ENSOPRG00000017111
N
0.890
YTHDF2
Otolemur garnettii
ENSOGAG00000014648
N
0.890
ENSORLG00000014665
Oryzias latipes
ENSORLG00000014665
N
0.879
ENSTRUG00000004288
Takifugu rubripes
ENSTRUG00000004288
N
0.879
ENSTRUG00000005049
Takifugu rubripes
ENSTRUG00000005049
N
0.879
ENSGACG00000002613
Gasterosteus aculeatus
ENSGACG00000002613
N
0.879
ENSGACG00000012014
Gasterosteus aculeatus
ENSGACG00000012014
N
0.879
YTHDF2
Taeniopygia guttata
ENSTGUG00000017347
N
0.879
ythdf1
Danio rerio
ENSDARG00000016447
N
0.879
ENSTNIG00000003975
Tetraodon nigroviridis
ENSTNIG00000003975
N
0.879
ENSORLG00000009739
Oryzias latipes
ENSORLG00000009739
N
0.879
YTHDF2
Ornithorhynchus anatinus
ENSOANG00000006124
N
0.868
ythdf2
Xenopus tropicalis
ENSXETG00000020636
N
0.868
AAH78013
Xenopus laevis
AAH78013
N
0.868
yth2
Danio rerio
ENSDARG00000014498
N
0.857
AAH68959
Xenopus laevis
AAH68959
N
0.857
YTHDF2
Gasterosteus aculeatus
ENSGACG00000009603
N
0.857
YTHDF2
Tetraodon nigroviridis
ENSTNIG00000017263
N
0.857
YTHDF2
Takifugu rubripes
ENSTRUG00000011923
N
0.857
YTHDF2
Oryzias latipes
ENSORLG00000014323
N
0.857
ENSTNIG00000012490
Tetraodon nigroviridis
ENSTNIG00000012490
N
0.846
e_gw.462.3.1
Branchiostoma floridae
e_gw.462.3.1
N
0.802
XP_001187433.1
Strongylocentrotus purpuratus
XP_001187433.1
N
0.791
XP_786921.2
Strongylocentrotus purpuratus
XP_786921.2
N
0.791
estExt_fgenesh1_pm.C_4090006
Capitella teleta
estExt_fgenesh1_pm.C_4090006
N
0.769
ENSCING00000004166
Ciona intestinalis
ENSCING00000004166
N
0.769
e_gw.90.29.1
Nematostella vectensis
e_gw.90.29.1
N
0.758
ENSCSAVG00000010987
Ciona savignyi
ENSCSAVG00000010987
N
0.758
XP_002161951.1
Hydra magnipapillata
XP_002161951.1
N
0.747
XP_002156821.1
Hydra magnipapillata
XP_002156821.1
N
0.747
DGIL_AUG5s6515g6t1
Acyrtosiphon pisum
DGIL_AUG5s6515g6t1
N
0.736
PHUM167190
Pediculus humanus
PHUM167190
N
0.736
62837
Helobdella robusta
62837
N
0.736
BGIBMGA007551
Bombyx mori
BGIBMGA007551
N
0.725
152141
Helobdella robusta
152141
N
0.725
Aqu1.220420
Amphimedon queenslandica
Aqu1.220420
N
0.725
Smp_040460
Schistosoma mansoni
Smp_040460
N
0.714
AGAP003817
Anopheles gambiae
AGAP003817
N
0.714
ENSMLUG00000006541
Myotis lucifugus
ENSMLUG00000006541
N
0.714
GL21952
Drosophila persimilis
FBgn0159545
N
0.714
GK12904
Drosophila willistoni
FBgn0214913
N
0.714
GA19581-RA
Drosophila pseudoobscura
FBgn0079577
N
0.714
AAEL005544
Aedes aegypti
AAEL005544
N
0.703
ENSMMUG00000029888
Macaca mulatta
ENSMMUG00000029888
N
0.703
GG12295
Drosophila erecta
FBgn0104586
N
0.703
GE10748
Drosophila yakuba
FBgn0228591
N
0.703
Sjc_0086280
Schistosoma japonicum
Sjc_0086280
N
0.703
GF18592
Drosophila ananassae
FBgn0095610
N
0.703