CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh1_pm.C_4090006
(
Capitella teleta
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
estExt_fgenesh1_pm.C_4090006
T62370_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh1_pm.C_4090006
YTH
53
143
LFFSVNGSGHFCGMAQMMSAVDYNASSSVWAQDKWKGQFEVKWIYVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKGKQVLRILHQY
Links
Other
YTH
family RBPs
Other
Capitella teleta
RBPs
158 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BGIBMGA007551
Bombyx mori
BGIBMGA007551
N
0.868
152141
Helobdella robusta
152141
N
0.857
e_gw.462.3.1
Branchiostoma floridae
e_gw.462.3.1
N
0.846
amel4_ncbi_hmm12284
Tribolium castaneum
amel4_ncbi_hmm12284
N
0.835
amel4_ncbi_hmm12284
Apis mellifera
amel4_ncbi_hmm12284
N
0.835
PHUM167190
Pediculus humanus
PHUM167190
N
0.835
nasonia_NCBI_hmm250744
Nasonia vitripennis
nasonia_NCBI_hmm250744
N
0.835
GK12904
Drosophila willistoni
FBgn0214913
N
0.824
GA19581-RA
Drosophila pseudoobscura
FBgn0079577
N
0.813
GF18592
Drosophila ananassae
FBgn0095610
N
0.813
DGIL_AUG5s6515g6t1
Acyrtosiphon pisum
DGIL_AUG5s6515g6t1
N
0.813
CG6422
Drosophila melanogaster
FBgn0039261
N
0.813
GE10748
Drosophila yakuba
FBgn0228591
N
0.813
62837
Helobdella robusta
62837
N
0.813
GG12295
Drosophila erecta
FBgn0104586
N
0.813
GM17761
Drosophila sechellia
FBgn0172669
N
0.813
GD18245
Drosophila simulans
FBgn0189779
N
0.813
GL21952
Drosophila persimilis
FBgn0159545
N
0.813
YTHDF2
Loxodonta africana
ENSLAFG00000030451
N
0.802
YTHDF2
Gorilla gorilla
ENSGGOG00000024069
N
0.802
YTHDF2
Macropus eugenii
ENSMEUG00000016488
N
0.802
LOC419583
Gallus gallus
ENSGALG00000000959
N
0.802
YTHDF2
Myotis lucifugus
ENSMLUG00000012606
N
0.802
YTHDF2
Meleagris gallopavo
ENSMGAG00000001610
N
0.802
YTHDF2
Erinaceus europaeus
ENSEEUG00000011398
N
0.802
YTHDF2
Macaca mulatta
ENSMMUG00000011391
N
0.802
LOC100070667
Equus caballus
ENSECAG00000023108
N
0.802
YTHDF2
Echinops telfairi
ENSETEG00000017614
N
0.802
YTHDF2
Felis catus
ENSFCAG00000012446
N
0.802
YTHDF2
Homo sapiens
ENSG00000198492
N
0.802
ENSTNIG00000012698
Tetraodon nigroviridis
ENSTNIG00000012698
N
0.802
YTHDF2
Sorex araneus
ENSSARG00000001187
N
0.802
YTHDF2
Pteropus vampyrus
ENSPVAG00000017224
N
0.802
Ythdf2
Dipodomys ordii
ENSDORG00000016564
N
0.802
YTHDF2
Tarsius syrichta
ENSTSYG00000004178
N
0.802
YTHDF2
Tursiops truncatus
ENSTTRG00000013603
N
0.802
XR_023164.1
Pan troglodytes
ENSPTRG00000000439
N
0.802
YTHDF2
Procavia capensis
ENSPCAG00000007587
N
0.802
Ythdf2
Mus musculus
ENSMUSG00000040025
N
0.802
YTHDF2
Oryctolagus cuniculus
ENSOCUG00000010612
N
0.802
YTHDF2
Otolemur garnettii
ENSOGAG00000014648
N
0.802
YTHDF2
Ochotona princeps
ENSOPRG00000017111
N
0.802
YTHDF2
Monodelphis domestica
ENSMODG00000010973
N
0.802
YTHDF2
Microcebus murinus
ENSMICG00000003729
N
0.802
YTHD2_BOVIN
Bos taurus
ENSBTAG00000015771
N
0.802
YTHDF2
Callithrix jacchus
ENSCJAG00000009804
N
0.802
YTHDF2
Cavia porcellus
ENSCPOG00000019907
N
0.802
YTHDF2
Canis familiaris
ENSCAFG00000011700
N
0.802
Ame_R001131
Ailuropoda melanoleuca
Ame_R001131
N
0.802
YTHDF2
Anolis carolinensis
ENSACAG00000010846
N
0.802
YTHDF2
Choloepus hoffmanni
ENSCHOG00000000357
N
0.802
AGAP003817
Anopheles gambiae
AGAP003817
N
0.802
ENSSARG00000007626
Sorex araneus
ENSSARG00000007626
N
0.791
CPIJ011115
Culex quinquefasciatus
CPIJ011115
N
0.791
ENSCAFG00000007215
Canis familiaris
ENSCAFG00000007215
N
0.791
ENSMMUG00000006729
Macaca mulatta
ENSMMUG00000006729
N
0.791
YTHDF2
Taeniopygia guttata
ENSTGUG00000017347
N
0.791
ENSMICG00000009379
Microcebus murinus
ENSMICG00000009379
N
0.791
YTHDF3
Bos taurus
ENSBTAG00000018557
N
0.791
ENSTBEG00000005747
Tupaia belangeri
ENSTBEG00000005747
N
0.791
Ythdf3
Rattus norvegicus
ENSRNOG00000010084
N
0.791
XR_024462.1
Pan troglodytes
ENSPTRG00000030993
N
0.791
YTHDF1
Bos taurus
ENSBTAG00000010383
N
0.791
ENSPPYG00000018626
Pongo pygmaeus
ENSPPYG00000018626
N
0.791
ENSPCAG00000016282
Procavia capensis
ENSPCAG00000016282
N
0.791
ENSORLG00000014665
Oryzias latipes
ENSORLG00000014665
N
0.791
ENSPVAG00000002740
Pteropus vampyrus
ENSPVAG00000002740
N
0.791
YTHDF1
Oryctolagus cuniculus
ENSOCUG00000012780
N
0.791
ENSTRUG00000004288
Takifugu rubripes
ENSTRUG00000004288
N
0.791
CPIJ011116
Culex quinquefasciatus
CPIJ011116
N
0.791
YTHDF2
Ornithorhynchus anatinus
ENSOANG00000006124
N
0.791
ENSOCUG00000008723
Oryctolagus cuniculus
ENSOCUG00000008723
N
0.791
Ythdf3
Mus musculus
ENSMUSG00000047213
N
0.791
ENSCHOG00000010194
Choloepus hoffmanni
ENSCHOG00000010194
N
0.791
ENSCPOG00000002961
Cavia porcellus
ENSCPOG00000002961
N
0.791
YTHDF1
Cavia porcellus
ENSCPOG00000010202
N
0.791
ENSG00000185728
Homo sapiens
ENSG00000185728
N
0.791
CpipJ_CPIJ011115
Culex pipiens
CpipJ_CPIJ011115
N
0.791
ENSTTRG00000014564
Tursiops truncatus
ENSTTRG00000014564
N
0.791
ENSETEG00000007144
Echinops telfairi
ENSETEG00000007144
N
0.791
GJ14120
Drosophila virilis
FBgn0201338
N
0.791
ythdf3
Danio rerio
ENSDARG00000057939
N
0.791
Ythdf1
Dipodomys ordii
ENSDORG00000002879
N
0.791
Ythdf3
Dipodomys ordii
ENSDORG00000014699
N
0.791
Ame_R018798
Ailuropoda melanoleuca
Ame_R018798
N
0.791
ENSGACG00000012014
Gasterosteus aculeatus
ENSGACG00000012014
N
0.791
ENSVPAG00000008104
Vicugna pacos
ENSVPAG00000008104
N
0.791
ENSTSYG00000009117
Tarsius syrichta
ENSTSYG00000009117
N
0.791
CpipJ_CPIJ011116
Culex pipiens
CpipJ_CPIJ011116
N
0.791
YTHDF3
Callithrix jacchus
ENSCJAG00000009217
N
0.791
ENSGGOG00000027681
Gorilla gorilla
ENSGGOG00000027681
N
0.791
ENSLAFG00000016052
Loxodonta africana
ENSLAFG00000016052
N
0.791
ENSTRUG00000007870
Takifugu rubripes
ENSTRUG00000007870
N
0.791
Ame_R014316
Ailuropoda melanoleuca
Ame_R014316
N
0.780
ENSTNIG00000003975
Tetraodon nigroviridis
ENSTNIG00000003975
N
0.780
ENSPPYG00000011226
Pongo pygmaeus
ENSPPYG00000011226
N
0.780
ENSACAG00000005560
Anolis carolinensis
ENSACAG00000005560
N
0.780
YTHDF1
Taeniopygia guttata
ENSTGUG00000007565
N
0.780
ENSTRUG00000005049
Takifugu rubripes
ENSTRUG00000005049
N
0.780
Ythdf1
Rattus norvegicus
ENSRNOG00000027015
N
0.780
YTHDF1
Tursiops truncatus
ENSTTRG00000001804
N
0.780
AAH68959
Xenopus laevis
AAH68959
N
0.780
YTHDF2
Takifugu rubripes
ENSTRUG00000011923
N
0.780
GH22368
Drosophila grimshawi
FBgn0129826
N
0.780
YTHDF3
Taeniopygia guttata
ENSTGUG00000011243
N
0.780
ENSACAG00000016837
Anolis carolinensis
ENSACAG00000016837
N
0.780
ENSMEUG00000011285
Macropus eugenii
ENSMEUG00000011285
N
0.780
ENSGACG00000002613
Gasterosteus aculeatus
ENSGACG00000002613
N
0.780
ENSMGAG00000006139
Meleagris gallopavo
ENSMGAG00000006139
N
0.780
ENSMGAG00000011168
Meleagris gallopavo
ENSMGAG00000011168
N
0.780
YTHDF1
Myotis lucifugus
ENSMLUG00000002241
N
0.780
A6MKQ0_CALJA
Callithrix jacchus
ENSCJAG00000010056
N
0.780
YTHDF1
Loxodonta africana
ENSLAFG00000008884
N
0.780
YTHDF1
Procavia capensis
ENSPCAG00000002452
N
0.780
YTHDF2
Gasterosteus aculeatus
ENSGACG00000009603
N
0.780
ENSGACG00000002998
Gasterosteus aculeatus
ENSGACG00000002998
N
0.780
Q5ZME7_CHICK
Gallus gallus
ENSGALG00000005745
N
0.780
Q5ZLM1_CHICK
Gallus gallus
ENSGALG00000015505
N
0.780
LOC776373
Gallus gallus
ENSGALG00000019473
N
0.780
YTHDF1
Macaca mulatta
ENSMMUG00000009227
N
0.780
YTHDF1
Canis familiaris
ENSCAFG00000012772
N
0.780
LOC100060217
Equus caballus
ENSECAG00000019475
N
0.780
YTHDF1
Ochotona princeps
ENSOPRG00000001758
N
0.780
ythdf1
Danio rerio
ENSDARG00000016447
N
0.780
ENSORLG00000009739
Oryzias latipes
ENSORLG00000009739
N
0.780
YTHDF2
Oryzias latipes
ENSORLG00000014323
N
0.780
YTHDF1
Otolemur garnettii
ENSOGAG00000000480
N
0.780
YTHDF1
Erinaceus europaeus
ENSEEUG00000007461
N
0.780
ENSOANG00000003723
Ornithorhynchus anatinus
ENSOANG00000003723
N
0.780
Ythdf1
Mus musculus
ENSMUSG00000038848
N
0.780
ENSMODG00000016842
Monodelphis domestica
ENSMODG00000016842
N
0.780
ENSMODG00000008255
Monodelphis domestica
ENSMODG00000008255
N
0.780
yth2
Danio rerio
ENSDARG00000014498
N
0.769
ythdf3
Xenopus tropicalis
ENSXETG00000021659
N
0.769
ythdf2
Xenopus tropicalis
ENSXETG00000020636
N
0.769
AAH81017
Xenopus laevis
AAH81017
N
0.769
YTHDF1
Homo sapiens
ENSG00000149658
N
0.769
AAH78013
Xenopus laevis
AAH78013
N
0.769
YTHDF1
Gorilla gorilla
ENSGGOG00000008340
N
0.769
AAEL005544
Aedes aegypti
AAEL005544
N
0.769
YTHDF1
Pteropus vampyrus
ENSPVAG00000017568
N
0.769
ENSTNIG00000012490
Tetraodon nigroviridis
ENSTNIG00000012490
N
0.769
YTHDF2
Tetraodon nigroviridis
ENSTNIG00000017263
N
0.769
YTHDF1
Pan troglodytes
ENSPTRG00000013730
N
0.769
ENSOANG00000005053
Ornithorhynchus anatinus
ENSOANG00000005053
N
0.769
ENSORLG00000008640
Oryzias latipes
ENSORLG00000008640
N
0.758
AAH60445
Xenopus laevis
AAH60445
N
0.758
ENSCING00000004166
Ciona intestinalis
ENSCING00000004166
N
0.758
ythdf1
Xenopus tropicalis
ENSXETG00000027086
N
0.758
ENSCSAVG00000010987
Ciona savignyi
ENSCSAVG00000010987
N
0.747
e_gw.90.29.1
Nematostella vectensis
e_gw.90.29.1
N
0.747
XP_001187433.1
Strongylocentrotus purpuratus
XP_001187433.1
N
0.747
XP_786921.2
Strongylocentrotus purpuratus
XP_786921.2
N
0.747
Aqu1.220420
Amphimedon queenslandica
Aqu1.220420
N
0.736
XP_002161951.1
Hydra magnipapillata
XP_002161951.1
N
0.736
Smp_040460
Schistosoma mansoni
Smp_040460
N
0.736
XP_002156821.1
Hydra magnipapillata
XP_002156821.1
N
0.736
Sjc_0086280
Schistosoma japonicum
Sjc_0086280
N
0.725