CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSORLG00000008640
(
Oryzias latipes
)
YTH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF04146 (YTH)
IPR007275
ENSORLG00000008640
T62104_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSORLP00000010838
YTH
480
570
LLFSVNGSGHFCGVAEMRSPVDYNAYAGVWSQDKWKGKFEVKWVFIKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKVIATF
ENSORLP00000010839
YTH
480
570
LLFSVNGSGHFCGVAEMRSPVDYNAYAGVWSQDKWKGKFEVKWVFIKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKVIATF
Links
Other
YTH
family RBPs
Other
Oryzias latipes
RBPs
140 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSGACG00000002998
Gasterosteus aculeatus
ENSGACG00000002998
N
0.967
ENSTRUG00000007870
Takifugu rubripes
ENSTRUG00000007870
N
0.967
YTHDF3
Callithrix jacchus
ENSCJAG00000009217
N
0.945
YTHDF3
Bos taurus
ENSBTAG00000018557
N
0.945
ENSCHOG00000010194
Choloepus hoffmanni
ENSCHOG00000010194
N
0.945
ythdf3
Xenopus tropicalis
ENSXETG00000021659
N
0.945
ENSTSYG00000009117
Tarsius syrichta
ENSTSYG00000009117
N
0.945
ENSTTRG00000014564
Tursiops truncatus
ENSTTRG00000014564
N
0.945
ENSVPAG00000008104
Vicugna pacos
ENSVPAG00000008104
N
0.945
ENSCPOG00000002961
Cavia porcellus
ENSCPOG00000002961
N
0.945
Ame_R018798
Ailuropoda melanoleuca
Ame_R018798
N
0.945
Ythdf3
Dipodomys ordii
ENSDORG00000014699
N
0.945
ENSMMUG00000006729
Macaca mulatta
ENSMMUG00000006729
N
0.945
Ythdf3
Mus musculus
ENSMUSG00000047213
N
0.945
ENSOANG00000005053
Ornithorhynchus anatinus
ENSOANG00000005053
N
0.945
ENSOCUG00000008723
Oryctolagus cuniculus
ENSOCUG00000008723
N
0.945
ENSMICG00000009379
Microcebus murinus
ENSMICG00000009379
N
0.945
ENSLAFG00000016052
Loxodonta africana
ENSLAFG00000016052
N
0.945
ENSTNIG00000012698
Tetraodon nigroviridis
ENSTNIG00000012698
N
0.945
ENSETEG00000007144
Echinops telfairi
ENSETEG00000007144
N
0.945
ENSG00000185728
Homo sapiens
ENSG00000185728
N
0.945
ENSGGOG00000027681
Gorilla gorilla
ENSGGOG00000027681
N
0.945
ythdf3
Danio rerio
ENSDARG00000057939
N
0.945
ENSCAFG00000007215
Canis familiaris
ENSCAFG00000007215
N
0.945
Ythdf3
Rattus norvegicus
ENSRNOG00000010084
N
0.945
ENSTBEG00000005747
Tupaia belangeri
ENSTBEG00000005747
N
0.945
ENSSARG00000007626
Sorex araneus
ENSSARG00000007626
N
0.945
ENSPVAG00000002740
Pteropus vampyrus
ENSPVAG00000002740
N
0.945
ENSPCAG00000016282
Procavia capensis
ENSPCAG00000016282
N
0.945
ENSPPYG00000018626
Pongo pygmaeus
ENSPPYG00000018626
N
0.945
XR_024462.1
Pan troglodytes
ENSPTRG00000030993
N
0.945
ENSMGAG00000011168
Meleagris gallopavo
ENSMGAG00000011168
N
0.934
ENSMODG00000008255
Monodelphis domestica
ENSMODG00000008255
N
0.934
ENSACAG00000016837
Anolis carolinensis
ENSACAG00000016837
N
0.934
YTHDF3
Taeniopygia guttata
ENSTGUG00000011243
N
0.934
Q5ZLM1_CHICK
Gallus gallus
ENSGALG00000015505
N
0.934
LOC776373
Gallus gallus
ENSGALG00000019473
N
0.934
ENSMEUG00000011285
Macropus eugenii
ENSMEUG00000011285
N
0.934
AAH81017
Xenopus laevis
AAH81017
N
0.923
Q5ZME7_CHICK
Gallus gallus
ENSGALG00000005745
N
0.901
ENSOANG00000003723
Ornithorhynchus anatinus
ENSOANG00000003723
N
0.901
ENSMGAG00000006139
Meleagris gallopavo
ENSMGAG00000006139
N
0.901
YTHDF1
Taeniopygia guttata
ENSTGUG00000007565
N
0.901
ENSACAG00000005560
Anolis carolinensis
ENSACAG00000005560
N
0.890
ythdf1
Xenopus tropicalis
ENSXETG00000027086
N
0.890
AAH60445
Xenopus laevis
AAH60445
N
0.890
YTHDF1
Canis familiaris
ENSCAFG00000012772
N
0.890
YTHDF1
Tursiops truncatus
ENSTTRG00000001804
N
0.890
YTHDF1
Erinaceus europaeus
ENSEEUG00000007461
N
0.890
LOC100060217
Equus caballus
ENSECAG00000019475
N
0.890
YTHDF1
Ochotona princeps
ENSOPRG00000001758
N
0.890
YTHDF1
Loxodonta africana
ENSLAFG00000008884
N
0.890
YTHDF1
Myotis lucifugus
ENSMLUG00000002241
N
0.890
Ythdf1
Rattus norvegicus
ENSRNOG00000027015
N
0.890
Ame_R014316
Ailuropoda melanoleuca
Ame_R014316
N
0.890
ENSMODG00000016842
Monodelphis domestica
ENSMODG00000016842
N
0.890
YTHDF1
Procavia capensis
ENSPCAG00000002452
N
0.890
Ythdf1
Mus musculus
ENSMUSG00000038848
N
0.890
ENSPPYG00000011226
Pongo pygmaeus
ENSPPYG00000011226
N
0.879
A6MKQ0_CALJA
Callithrix jacchus
ENSCJAG00000010056
N
0.879
YTHDF1
Cavia porcellus
ENSCPOG00000010202
N
0.879
ENSTNIG00000003975
Tetraodon nigroviridis
ENSTNIG00000003975
N
0.879
ENSGACG00000002613
Gasterosteus aculeatus
ENSGACG00000002613
N
0.879
ENSTRUG00000005049
Takifugu rubripes
ENSTRUG00000005049
N
0.879
YTHDF1
Oryctolagus cuniculus
ENSOCUG00000012780
N
0.879
ythdf1
Danio rerio
ENSDARG00000016447
N
0.879
YTHDF1
Pteropus vampyrus
ENSPVAG00000017568
N
0.879
ENSORLG00000009739
Oryzias latipes
ENSORLG00000009739
N
0.879
YTHDF1
Macaca mulatta
ENSMMUG00000009227
N
0.879
ENSTRUG00000004288
Takifugu rubripes
ENSTRUG00000004288
N
0.868
YTHDF1
Gorilla gorilla
ENSGGOG00000008340
N
0.868
YTHDF1
Otolemur garnettii
ENSOGAG00000000480
N
0.868
ENSORLG00000014665
Oryzias latipes
ENSORLG00000014665
N
0.868
YTHDF1
Homo sapiens
ENSG00000149658
N
0.868
YTHDF1
Pan troglodytes
ENSPTRG00000013730
N
0.868
ENSGACG00000012014
Gasterosteus aculeatus
ENSGACG00000012014
N
0.868
Ythdf1
Dipodomys ordii
ENSDORG00000002879
N
0.857
LOC419583
Gallus gallus
ENSGALG00000000959
N
0.857
YTHDF2
Meleagris gallopavo
ENSMGAG00000001610
N
0.857
YTHDF1
Bos taurus
ENSBTAG00000010383
N
0.857
YTHDF2
Anolis carolinensis
ENSACAG00000010846
N
0.857
YTHDF2
Macaca mulatta
ENSMMUG00000011391
N
0.846
YTHDF2
Oryzias latipes
ENSORLG00000014323
N
0.846
YTHDF2
Gasterosteus aculeatus
ENSGACG00000009603
N
0.846
YTHDF2
Procavia capensis
ENSPCAG00000007587
N
0.846
YTHDF2
Loxodonta africana
ENSLAFG00000030451
N
0.846
YTHDF2
Ochotona princeps
ENSOPRG00000017111
N
0.846
Ythdf2
Mus musculus
ENSMUSG00000040025
N
0.846
YTHDF2
Microcebus murinus
ENSMICG00000003729
N
0.846
YTHDF2
Macropus eugenii
ENSMEUG00000016488
N
0.846
YTHDF2
Otolemur garnettii
ENSOGAG00000014648
N
0.846
YTHDF2
Oryctolagus cuniculus
ENSOCUG00000010612
N
0.846
YTHDF2
Homo sapiens
ENSG00000198492
N
0.846
YTHDF2
Myotis lucifugus
ENSMLUG00000012606
N
0.846
YTHDF2
Gorilla gorilla
ENSGGOG00000024069
N
0.846
YTHDF2
Monodelphis domestica
ENSMODG00000010973
N
0.846
yth2
Danio rerio
ENSDARG00000014498
N
0.846
AAH78013
Xenopus laevis
AAH78013
N
0.846
XR_023164.1
Pan troglodytes
ENSPTRG00000000439
N
0.846
YTHD2_BOVIN
Bos taurus
ENSBTAG00000015771
N
0.846
YTHDF2
Sorex araneus
ENSSARG00000001187
N
0.846
YTHDF2
Canis familiaris
ENSCAFG00000011700
N
0.846
YTHDF2
Takifugu rubripes
ENSTRUG00000011923
N
0.846
Ame_R001131
Ailuropoda melanoleuca
Ame_R001131
N
0.846
ythdf2
Xenopus tropicalis
ENSXETG00000020636
N
0.846
YTHDF2
Tursiops truncatus
ENSTTRG00000013603
N
0.846
YTHDF2
Taeniopygia guttata
ENSTGUG00000017347
N
0.846
YTHDF2
Tarsius syrichta
ENSTSYG00000004178
N
0.846
YTHDF2
Choloepus hoffmanni
ENSCHOG00000000357
N
0.846
YTHDF2
Tetraodon nigroviridis
ENSTNIG00000017263
N
0.846
YTHDF2
Felis catus
ENSFCAG00000012446
N
0.846
YTHDF2
Echinops telfairi
ENSETEG00000017614
N
0.846
Ythdf2
Dipodomys ordii
ENSDORG00000016564
N
0.846
LOC100070667
Equus caballus
ENSECAG00000023108
N
0.846
YTHDF2
Cavia porcellus
ENSCPOG00000019907
N
0.846
YTHDF2
Callithrix jacchus
ENSCJAG00000009804
N
0.846
YTHDF2
Erinaceus europaeus
ENSEEUG00000011398
N
0.846
YTHDF2
Pteropus vampyrus
ENSPVAG00000017224
N
0.846
YTHDF2
Ornithorhynchus anatinus
ENSOANG00000006124
N
0.835
ENSTNIG00000012490
Tetraodon nigroviridis
ENSTNIG00000012490
N
0.835
AAH68959
Xenopus laevis
AAH68959
N
0.824
e_gw.462.3.1
Branchiostoma floridae
e_gw.462.3.1
N
0.791
XP_001187433.1
Strongylocentrotus purpuratus
XP_001187433.1
N
0.769
XP_786921.2
Strongylocentrotus purpuratus
XP_786921.2
N
0.769
ENSCING00000004166
Ciona intestinalis
ENSCING00000004166
N
0.758
estExt_fgenesh1_pm.C_4090006
Capitella teleta
estExt_fgenesh1_pm.C_4090006
N
0.758
PHUM167190
Pediculus humanus
PHUM167190
N
0.747
ENSCSAVG00000010987
Ciona savignyi
ENSCSAVG00000010987
N
0.747
e_gw.90.29.1
Nematostella vectensis
e_gw.90.29.1
N
0.747
Smp_040460
Schistosoma mansoni
Smp_040460
N
0.725
XP_002161951.1
Hydra magnipapillata
XP_002161951.1
N
0.714
XP_002156821.1
Hydra magnipapillata
XP_002156821.1
N
0.714
DGIL_AUG5s6515g6t1
Acyrtosiphon pisum
DGIL_AUG5s6515g6t1
N
0.714
Sjc_0086280
Schistosoma japonicum
Sjc_0086280
N
0.714
62837
Helobdella robusta
62837
N
0.714
152141
Helobdella robusta
152141
N
0.714
GA19581-RA
Drosophila pseudoobscura
FBgn0079577
N
0.703
BGIBMGA007551
Bombyx mori
BGIBMGA007551
N
0.703
GL21952
Drosophila persimilis
FBgn0159545
N
0.703