ENSCHOG00000009131 (Choloepus hoffmanni)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSCHOG00000009131 T077814_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
ENSCHOG00000009131
M07109_2.00		 Choloepus hoffmanni NGURGKKN JPLE
Sasse et al.(2025)
RM_Cho.hof_ENSCHOG00000009131 		0.009

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.769
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.769
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.769
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.769
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
RBM28
M00069_2.00 		Homo sapiens GWGUAGD RNAcompete
Ray et al.(2013)
RNCMPT00049 		0.288
(11.08%)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.009
(87.55%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCHOP00000008074 RRM 1 44
ENSCHOP00000008074 RRM 41 109

RNA contacting residues

Links

Other RRM family RBPs
Other Choloepus hoffmanni RBPs

55 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSMGAG00000004237 Meleagris gallopavo ENSMGAG00000004237 I 0.982
ENSSARG00000006409 Sorex araneus ENSSARG00000006409 I 0.894
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.769
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.769
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.769
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.769
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.769
SFPQ Echinops telfairi ENSETEG00000001095 I 0.769
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.769
SFPQ Homo sapiens ENSG00000116560 D 0.769
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.769
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.769
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.769
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.769
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.769
Sfpq Mus musculus ENSMUSG00000028820 I 0.769
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.769
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.769
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.769
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.769
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.769
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.769
SFPQ Procavia capensis ENSPCAG00000006164 I 0.769
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.769
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.769
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.769
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.769
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.769
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.769
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.769
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.769
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.769
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.769
SFPQ Bos taurus ENSBTAG00000016328 I 0.769
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.769
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.762
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.762
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.755
Aan_R015520 Calypte anna Aan_R015520 I 0.755
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.755
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.755
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.755
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.755
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.755
Tal_R009770 Tyto alba Tal_R009770 I 0.755
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.755
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.748
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.741
SFPQ Gallus gallus ENSGALG00000002514 I 0.741
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.728
SFPQ Anolis carolinensis ENSACAG00000013307 I 0.728
ENSCAFG00000018271 Canis familiaris ENSCAFG00000018271 I 0.728
PSPC1 Meleagris gallopavo ENSMGAG00000015134 I 0.708
SFPQ Pteropus vampyrus ENSPVAG00000001865 I 0.707
ENSCAFG00000017608 Canis familiaris ENSCAFG00000017608 I 0.701