SFPQ (Pteropus vampyrus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSPVAG00000001865 T086685_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
SFPQ
M23291_2.00		 Pteropus vampyrus NGURGKKU JPLE
Sasse et al.(2025)
RM_Pte.vam_ENSPVAG00000001865 		0.009

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.932
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.932
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.932
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.932
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.009
(90.27%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPVAP00000001761 RRM 288 364
ENSPVAP00000001761 RRM 361 429

RNA contacting residues

Links

Other RRM family RBPs
Other Pteropus vampyrus RBPs

115 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.939
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.939
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.939
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.939
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.939
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.939
SFPQ Bos taurus ENSBTAG00000016328 I 0.939
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.939
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.939
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.939
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.939
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.939
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.939
SFPQ Echinops telfairi ENSETEG00000001095 I 0.939
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.939
SFPQ Homo sapiens ENSG00000116560 D 0.939
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.939
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.939
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.939
Sfpq Mus musculus ENSMUSG00000028820 I 0.939
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.939
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.939
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.939
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.939
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.939
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.939
SFPQ Procavia capensis ENSPCAG00000006164 I 0.939
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.939
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.939
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.932
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.925
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.918
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.918
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.918
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.918
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.918
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.912
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.912
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.905
Aan_R015520 Calypte anna Aan_R015520 I 0.905
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.905
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.905
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.905
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.905
Tal_R009770 Tyto alba Tal_R009770 I 0.905
SFPQ Anolis carolinensis ENSACAG00000013307 I 0.905
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.905
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.891
ENSCAFG00000018271 Canis familiaris ENSCAFG00000018271 I 0.891
SFPQ Gallus gallus ENSGALG00000002514 I 0.891
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.871
sfpq Takifugu rubripes ENSTRUG00000003783 I 0.837
ENSCAFG00000017608 Canis familiaris ENSCAFG00000017608 I 0.831
sfpq Xenopus tropicalis XB-GENE-5968416 I 0.830
ENSLACG00000014728 Latimeria chalumnae ENSLACG00000014728 I 0.826
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.816
sfpq Tetraodon nigroviridis ENSTNIG00000011331 I 0.809
SFPQ Macaca mulatta ENSMMUG00000019154 I 0.796
ENSGMOG00000011950 Gadus morhua ENSGMOG00000011950 I 0.787
sfpq Gasterosteus aculeatus ENSGACG00000002034 I 0.779
ENSAMXG00000011538 Astyanax mexicanus ENSAMXG00000011538 I 0.776
ENSXMAG00000016391 Xiphophorus maculatus ENSXMAG00000016391 I 0.764
ENSONIG00000017737 Oreochromis niloticus ENSONIG00000017737 I 0.759
ENSPFOG00000003127 Poecilia formosa ENSPFOG00000003127 I 0.757
ENSGMOG00000011957 Gadus morhua ENSGMOG00000011957 I 0.757
sfpq Oryzias latipes ENSORLG00000007459 I 0.748
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.741
Aan_R001274 Calypte anna Aan_R001274 I 0.741
Afo_R008576 Aptenodytes forsteri Afo_R008576 I 0.741
Brh_R000965 Buceros rhinoceros Brh_R000965 I 0.741
Ogr05221 Ophisaurus gracilis Ogr05221 I 0.741
Pvit_12920 Pogona vitticeps Pvit_12920 I 0.741
Tal_R009732 Tyto alba Tal_R009732 I 0.741
pspc1 Xenopus tropicalis XB-GENE-492866 I 0.741
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.741
ENSFALG00000008750 Ficedula albicollis ENSFALG00000008750 I 0.741
PSPC1 Gallus gallus ENSGALG00000017142 I 0.741
ENSLACG00000010762 Latimeria chalumnae ENSLACG00000010762 I 0.728
sfpq Danio rerio ENSDARG00000011564 I 0.725
Alligator_sinensis_CCG002824.1 Alligator sinensis Alligator_sinensis_CCG002824.1 I 0.725
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.721
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.721
ENSBTAP00000005134-D1 Bos grunniens ENSBTAP00000005134-D1 I 0.721
PSPC1 Bos taurus ENSBTAG00000003934 I 0.721
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.721
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.721
ENSOARG00000014163 Ovis aries ENSOARG00000014163 I 0.721
ENSPSIG00000005168 Pelodiscus sinensis ENSPSIG00000005168 I 0.721
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.714
PSPC1 Sorex araneus ENSSARG00000000888 I 0.714
ENSSHAG00000004696 Sarcophilus harrisii ENSSHAG00000004696 I 0.714
ENSSTOG00000026833 Ictidomys tridecemlineatus ENSSTOG00000026833 I 0.714
ENSAMEG00000017420 Ailuropoda melanoleuca ENSAMEG00000017420 I 0.714
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.714
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.714
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.714
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 I 0.714
PSPC1 Felis catus ENSFCAG00000027841 I 0.714
PSPC1 Homo sapiens ENSG00000121390 I 0.714
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.714
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.714
ENSMEUG00000000476 Macropus eugenii ENSMEUG00000000476 I 0.714
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.714
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.714
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.714
ENSMPUG00000013347 Mustela putorius furo ENSMPUG00000013347 I 0.714
Pspc1 Mus musculus ENSMUSG00000021938 I 0.714
ENSNLEG00000001294 Nomascus leucogenys ENSNLEG00000001294 I 0.714
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.714
PSPC1 Otolemur garnettii ENSOGAG00000012643 I 0.714
ENSPANG00000001992 Papio anubis ENSPANG00000001992 I 0.714
ENSPPYG00000005186 Pongo abelii ENSPPYG00000005186 I 0.714
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.714
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.707
ENSCHOG00000009131 Choloepus hoffmanni ENSCHOG00000009131 I 0.707