SFPQ (Gallus gallus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSGALG00000002514 T080858_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
SFPQ
M11512_2.00		 Gallus gallus NGURGKKB JPLE
Sasse et al.(2025)
RM_Gal.gal_ENSGALG00000002514 		0.010

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.952
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.952
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.952
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.952
NONO
M00507_2.00 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
0.716
NONO
M00505_2.00 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
0.716
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
RBM28
M00069_2.00 		Homo sapiens GWGUAGD RNAcompete
Ray et al.(2013)
RNCMPT00049 		0.293
(10.13%)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.010
(86.98%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000003954 RRM 234 311
ENSGALP00000003954 RRM 308 374

RNA contacting residues

Links

Other RRM family RBPs
Other Gallus gallus RBPs

188 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.986
Aan_R015520 Calypte anna Aan_R015520 I 0.986
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.986
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.986
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.986
Tal_R009770 Tyto alba Tal_R009770 I 0.986
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.986
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.980
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.973
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.973
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.973
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.973
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.959
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.959
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.959
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.952
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.952
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.952
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.952
Sfpq Mus musculus ENSMUSG00000028820 I 0.952
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.952
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.952
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.952
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.952
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.952
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.952
SFPQ Procavia capensis ENSPCAG00000006164 I 0.952
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.952
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.952
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.952
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.952
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.952
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.952
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.952
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.952
SFPQ Bos taurus ENSBTAG00000016328 I 0.952
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.952
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.952
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.952
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.952
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.952
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.952
SFPQ Echinops telfairi ENSETEG00000001095 I 0.952
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.952
SFPQ Homo sapiens ENSG00000116560 D 0.952
SFPQ Anolis carolinensis ENSACAG00000013307 I 0.952
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.925
ENSCAFG00000018271 Canis familiaris ENSCAFG00000018271 I 0.925
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.905
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.897
SFPQ Pteropus vampyrus ENSPVAG00000001865 I 0.891
sfpq Xenopus tropicalis XB-GENE-5968416 I 0.884
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.878
ENSLACG00000014728 Latimeria chalumnae ENSLACG00000014728 I 0.872
sfpq Takifugu rubripes ENSTRUG00000003783 I 0.871
ENSCAFG00000017608 Canis familiaris ENSCAFG00000017608 I 0.863
SFPQ Macaca mulatta ENSMMUG00000019154 I 0.841
sfpq Tetraodon nigroviridis ENSTNIG00000011331 I 0.836
ENSGMOG00000011950 Gadus morhua ENSGMOG00000011950 I 0.827
sfpq Gasterosteus aculeatus ENSGACG00000002034 I 0.826
ENSAMXG00000011538 Astyanax mexicanus ENSAMXG00000011538 I 0.810
ENSXMAG00000016391 Xiphophorus maculatus ENSXMAG00000016391 I 0.797
ENSGMOG00000011957 Gadus morhua ENSGMOG00000011957 I 0.796
sfpq Oryzias latipes ENSORLG00000007459 I 0.795
ENSONIG00000017737 Oreochromis niloticus ENSONIG00000017737 I 0.791
ENSPFOG00000003127 Poecilia formosa ENSPFOG00000003127 I 0.791
PSPC1 Gallus gallus ENSGALG00000017142 I 0.776
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.776
Aan_R001274 Calypte anna Aan_R001274 I 0.776
Afo_R008576 Aptenodytes forsteri Afo_R008576 I 0.776
Brh_R000965 Buceros rhinoceros Brh_R000965 I 0.776
Ogr05221 Ophisaurus gracilis Ogr05221 I 0.776
Pvit_12920 Pogona vitticeps Pvit_12920 I 0.776
Tal_R009732 Tyto alba Tal_R009732 I 0.776
pspc1 Xenopus tropicalis XB-GENE-492866 I 0.776
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.776
ENSFALG00000008750 Ficedula albicollis ENSFALG00000008750 I 0.776
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.772
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.772
ENSMEUG00000000476 Macropus eugenii ENSMEUG00000000476 I 0.772
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.772
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.772
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.772
ENSMPUG00000013347 Mustela putorius furo ENSMPUG00000013347 I 0.772
Pspc1 Mus musculus ENSMUSG00000021938 I 0.772
ENSNLEG00000001294 Nomascus leucogenys ENSNLEG00000001294 I 0.772
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.772
PSPC1 Otolemur garnettii ENSOGAG00000012643 I 0.772
ENSPANG00000001992 Papio anubis ENSPANG00000001992 I 0.772
ENSPPYG00000005186 Pongo abelii ENSPPYG00000005186 I 0.772
ENSPSIG00000005168 Pelodiscus sinensis ENSPSIG00000005168 I 0.772
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.772
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.772
PSPC1 Sorex araneus ENSSARG00000000888 I 0.772
ENSSHAG00000004696 Sarcophilus harrisii ENSSHAG00000004696 I 0.772
ENSSTOG00000026833 Ictidomys tridecemlineatus ENSSTOG00000026833 I 0.772
ENSAMEG00000017420 Ailuropoda melanoleuca ENSAMEG00000017420 I 0.772
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.772
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.772
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.772
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 I 0.772
PSPC1 Felis catus ENSFCAG00000027841 I 0.772
PSPC1 Homo sapiens ENSG00000121390 I 0.772
ENSOARG00000014163 Ovis aries ENSOARG00000014163 I 0.766
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.766
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.766
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.766
ENSBTAP00000005134-D1 Bos grunniens ENSBTAP00000005134-D1 I 0.766
PSPC1 Bos taurus ENSBTAG00000003934 I 0.766
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.766
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.766
ENSLOCG00000010832 Lepisosteus oculatus ENSLOCG00000010832 I 0.759
Alligator_sinensis_CCG002824.1 Alligator sinensis Alligator_sinensis_CCG002824.1 I 0.758
ENSLACG00000010762 Latimeria chalumnae ENSLACG00000010762 I 0.755
ENSMGAG00000004237 Meleagris gallopavo ENSMGAG00000004237 I 0.755
ENSLOCG00000014739 Lepisosteus oculatus ENSLOCG00000014739 I 0.753
ENSAMXG00000015717 Astyanax mexicanus ENSAMXG00000015717 I 0.752
pspc1 Danio rerio ENSDARG00000006621 I 0.752
sfpq Danio rerio ENSDARG00000011564 I 0.750
ENSGMOG00000015074 Gadus morhua ENSGMOG00000015074 I 0.745
ENSCHOG00000009131 Choloepus hoffmanni ENSCHOG00000009131 I 0.741
ENSPMAG00000005583 Petromyzon marinus ENSPMAG00000005583 I 0.735
nono.L Xenopus laevis XB-GENE-1002501 I 0.733
ENSPFOG00000003362 Poecilia formosa ENSPFOG00000003362 I 0.730
ENSDNOG00000003267 Dasypus novemcinctus ENSDNOG00000003267 I 0.728
NONO Anolis carolinensis ENSACAG00000015026 I 0.726
ENSLACG00000000598 Latimeria chalumnae ENSLACG00000000598 I 0.724
nono Danio rerio ENSDARG00000020482 I 0.724
ENSPSIG00000010678 Pelodiscus sinensis ENSPSIG00000010678 I 0.723
Alligator_sinensis_CCG000628.3 Alligator sinensis Alligator_sinensis_CCG000628.3 I 0.723
Cmyd_10013139 Chelonia mydas Cmyd_10013139 I 0.723
ENSORLG00000004232 Oryzias latipes ENSORLG00000004232 I 0.719
NONO Gallus gallus ENSGALG00000005507 I 0.716
NONO Gorilla gorilla ENSGGOG00000006194 I 0.716
NONO Loxodonta africana ENSLAFG00000013422 I 0.716
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.716
NONO Microcebus murinus ENSMICG00000000232 I 0.716
NONO Myotis lucifugus ENSMLUG00000002489 I 0.716
NONO Macaca mulatta ENSMMUG00000020481 I 0.716
ENSMPUG00000004937 Mustela putorius furo ENSMPUG00000004937 I 0.716
Nono Mus musculus ENSMUSG00000031311 I 0.716
ENSNLEG00000001278 Nomascus leucogenys ENSNLEG00000001278 I 0.716
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 0.716
NONO Otolemur garnettii ENSOGAG00000004834 I 0.716
ENSPANG00000013979 Papio anubis ENSPANG00000013979 I 0.716
NONO Procavia capensis ENSPCAG00000002541 I 0.716
ENSPPYG00000020451 Pongo abelii ENSPPYG00000020451 I 0.716
NONO Pan troglodytes ENSPTRG00000022010 I 0.716
NONO Pteropus vampyrus ENSPVAG00000016503 I 0.716
Nono Rattus norvegicus ENSRNOG00000003689 I 0.716
NONO Sus scrofa ENSSSCG00000023245 I 0.716
ENSSTOG00000015869 Ictidomys tridecemlineatus ENSSTOG00000015869 I 0.716
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.716
NONO Tursiops truncatus ENSTTRG00000009605 I 0.716
NONO Vicugna pacos ENSVPAG00000002272 I 0.716
ENSXMAG00000007929 Xiphophorus maculatus ENSXMAG00000007929 I 0.716
Afo_R007329 Aptenodytes forsteri Afo_R007329 I 0.716
Brh_R000687 Buceros rhinoceros Brh_R000687 I 0.716
ENSBTAP00000016122-D1 Bos grunniens ENSBTAP00000016122-D1 I 0.716
ENSP00000276079 Macaca fascicularis ENSP00000276079 I 0.716
Myotis_brandtii_NONO_10007307 Myotis brandtii Myotis_brandtii_NONO_10007307 I 0.716
Ogr12033 Ophisaurus gracilis Ogr12033 I 0.716
Pvit_05344 Pogona vitticeps Pvit_05344 I 0.716
Tal_R004102 Tyto alba Tal_R004102 I 0.716
nono Xenopus tropicalis XB-GENE-1002494 I 0.716
ENSAMEG00000016057 Ailuropoda melanoleuca ENSAMEG00000016057 I 0.716
ENSAPLG00000002642 Anas platyrhynchos ENSAPLG00000002642 I 0.716
NONO Bos taurus ENSBTAG00000012152 I 0.716
ENSCAFG00000003207 Canis familiaris ENSCAFG00000003207 I 0.716
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 0.716
ENSCJAG00000036744 Callithrix jacchus ENSCJAG00000036744 I 0.716
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 0.716
NONO Equus caballus ENSECAG00000008502 I 0.716
NONO Erinaceus europaeus ENSEEUG00000014404 I 0.716
ENSFALG00000011765 Ficedula albicollis ENSFALG00000011765 I 0.716
NONO Felis catus ENSFCAG00000014807 I 0.716
NONO Homo sapiens ENSG00000147140 D 0.716
ENSAMXG00000006846 Astyanax mexicanus ENSAMXG00000006846 I 0.714
ENSMEUG00000004294 Macropus eugenii ENSMEUG00000004294 I 0.709
NONO Monodelphis domestica ENSMODG00000004445 I 0.709
ENSOARG00000016966 Ovis aries ENSOARG00000016966 I 0.709
NONO Sorex araneus ENSSARG00000007959 I 0.709
ENSSHAG00000010195 Sarcophilus harrisii ENSSHAG00000010195 I 0.709
ENSCPOG00000023605 Cavia porcellus ENSCPOG00000023605 I 0.709
Ogr00865 Ophisaurus gracilis Ogr00865 I 0.703
pspc1 Gasterosteus aculeatus ENSGACG00000014901 I 0.703
Aan_R015248 Calypte anna Aan_R015248 I 0.703
Gfo_R003471 Geospiza fortis Gfo_R003471 I 0.701