Pvit_19348 (Pogona vitticeps)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 Pvit_19348 T120091_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
Pvit_19348
M22458_2.00		 Pogona vitticeps NGURGKKU JPLE
Sasse et al.(2025)
RM_Pog.vit_Pvit_19348 		0.009

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.980
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.980
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.980
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.980
NONO
M00507_2.00 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
0.730
NONO
M00505_2.00 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
0.730
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.009
(88.20%)

RNA Binding Domains

Protein ID Domain From To Sequence
Pvit_19348 RRM 76 153
Pvit_19348 RRM 150 218

RNA contacting residues

Links

Other RRM family RBPs
Other Pogona vitticeps RBPs

188 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.986
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.986
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.986
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.980
SFPQ Bos taurus ENSBTAG00000016328 I 0.980
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.980
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.980
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.980
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.980
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.980
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.980
SFPQ Echinops telfairi ENSETEG00000001095 I 0.980
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.980
SFPQ Homo sapiens ENSG00000116560 D 0.980
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.980
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.980
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.980
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.980
Sfpq Mus musculus ENSMUSG00000028820 I 0.980
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.980
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.980
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.980
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.980
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.980
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.980
SFPQ Procavia capensis ENSPCAG00000006164 I 0.980
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.980
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.980
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.980
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.980
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.980
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.980
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.980
Tal_R009770 Tyto alba Tal_R009770 I 0.973
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.973
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.973
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.973
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.973
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.973
Aan_R015520 Calypte anna Aan_R015520 I 0.973
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.973
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.973
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.973
SFPQ Anolis carolinensis ENSACAG00000013307 I 0.966
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.966
SFPQ Gallus gallus ENSGALG00000002514 I 0.959
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.952
ENSCAFG00000018271 Canis familiaris ENSCAFG00000018271 I 0.939
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.932
SFPQ Pteropus vampyrus ENSPVAG00000001865 I 0.918
ENSLACG00000014728 Latimeria chalumnae ENSLACG00000014728 I 0.899
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.898
sfpq Xenopus tropicalis XB-GENE-5968416 I 0.891
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.884
sfpq Takifugu rubripes ENSTRUG00000003783 I 0.878
ENSCAFG00000017608 Canis familiaris ENSCAFG00000017608 I 0.865
SFPQ Macaca mulatta ENSMMUG00000019154 I 0.844
sfpq Tetraodon nigroviridis ENSTNIG00000011331 I 0.842
ENSAMXG00000011538 Astyanax mexicanus ENSAMXG00000011538 I 0.837
ENSGMOG00000011950 Gadus morhua ENSGMOG00000011950 I 0.827
sfpq Gasterosteus aculeatus ENSGACG00000002034 I 0.826
sfpq Oryzias latipes ENSORLG00000007459 I 0.808
ENSXMAG00000016391 Xiphophorus maculatus ENSXMAG00000016391 I 0.804
ENSPFOG00000003127 Poecilia formosa ENSPFOG00000003127 I 0.797
ENSGMOG00000011957 Gadus morhua ENSGMOG00000011957 I 0.796
ENSONIG00000017737 Oreochromis niloticus ENSONIG00000017737 I 0.791
pspc1 Xenopus tropicalis XB-GENE-492866 I 0.789
Tal_R009732 Tyto alba Tal_R009732 I 0.769
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.769
ENSFALG00000008750 Ficedula albicollis ENSFALG00000008750 I 0.769
PSPC1 Gallus gallus ENSGALG00000017142 I 0.769
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.769
Aan_R001274 Calypte anna Aan_R001274 I 0.769
Afo_R008576 Aptenodytes forsteri Afo_R008576 I 0.769
Brh_R000965 Buceros rhinoceros Brh_R000965 I 0.769
Ogr05221 Ophisaurus gracilis Ogr05221 I 0.769
Pvit_12920 Pogona vitticeps Pvit_12920 I 0.769
sfpq Danio rerio ENSDARG00000011564 I 0.762
ENSCHOG00000009131 Choloepus hoffmanni ENSCHOG00000009131 I 0.755
ENSMGAG00000004237 Meleagris gallopavo ENSMGAG00000004237 I 0.755
Alligator_sinensis_CCG002824.1 Alligator sinensis Alligator_sinensis_CCG002824.1 I 0.752
ENSAMEG00000017420 Ailuropoda melanoleuca ENSAMEG00000017420 I 0.748
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.748
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.748
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.748
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 I 0.748
PSPC1 Felis catus ENSFCAG00000027841 I 0.748
PSPC1 Homo sapiens ENSG00000121390 I 0.748
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.748
ENSLACG00000010762 Latimeria chalumnae ENSLACG00000010762 I 0.748
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.748
ENSMEUG00000000476 Macropus eugenii ENSMEUG00000000476 I 0.748
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.748
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.748
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.748
ENSMPUG00000013347 Mustela putorius furo ENSMPUG00000013347 I 0.748
Pspc1 Mus musculus ENSMUSG00000021938 I 0.748
ENSNLEG00000001294 Nomascus leucogenys ENSNLEG00000001294 I 0.748
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.748
PSPC1 Otolemur garnettii ENSOGAG00000012643 I 0.748
ENSPANG00000001992 Papio anubis ENSPANG00000001992 I 0.748
ENSPMAG00000005583 Petromyzon marinus ENSPMAG00000005583 I 0.748
ENSPPYG00000005186 Pongo abelii ENSPPYG00000005186 I 0.748
ENSPSIG00000005168 Pelodiscus sinensis ENSPSIG00000005168 I 0.748
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.748
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.748
PSPC1 Sorex araneus ENSSARG00000000888 I 0.748
ENSSHAG00000004696 Sarcophilus harrisii ENSSHAG00000004696 I 0.748
ENSSTOG00000026833 Ictidomys tridecemlineatus ENSSTOG00000026833 I 0.748
PSPC1 Bos taurus ENSBTAG00000003934 I 0.741
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.741
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.741
ENSLOCG00000010832 Lepisosteus oculatus ENSLOCG00000010832 I 0.741
ENSOARG00000014163 Ovis aries ENSOARG00000014163 I 0.741
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.741
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.741
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.741
ENSBTAP00000005134-D1 Bos grunniens ENSBTAP00000005134-D1 I 0.741
ENSPFOG00000003362 Poecilia formosa ENSPFOG00000003362 I 0.736
ENSPSIG00000010678 Pelodiscus sinensis ENSPSIG00000010678 I 0.736
Alligator_sinensis_CCG000628.3 Alligator sinensis Alligator_sinensis_CCG000628.3 I 0.736
Cmyd_10013139 Chelonia mydas Cmyd_10013139 I 0.736
nono.L Xenopus laevis XB-GENE-1002501 I 0.735
ENSGMOG00000015074 Gadus morhua ENSGMOG00000015074 I 0.735
ENSLOCG00000014739 Lepisosteus oculatus ENSLOCG00000014739 I 0.735
Tal_R004102 Tyto alba Tal_R004102 I 0.730
ENSAMEG00000016057 Ailuropoda melanoleuca ENSAMEG00000016057 I 0.730
ENSAPLG00000002642 Anas platyrhynchos ENSAPLG00000002642 I 0.730
NONO Bos taurus ENSBTAG00000012152 I 0.730
ENSCAFG00000003207 Canis familiaris ENSCAFG00000003207 I 0.730
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 0.730
ENSCJAG00000036744 Callithrix jacchus ENSCJAG00000036744 I 0.730
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 0.730
ENSDNOG00000003267 Dasypus novemcinctus ENSDNOG00000003267 I 0.730
NONO Equus caballus ENSECAG00000008502 I 0.730
NONO Erinaceus europaeus ENSEEUG00000014404 I 0.730
ENSFALG00000011765 Ficedula albicollis ENSFALG00000011765 I 0.730
NONO Felis catus ENSFCAG00000014807 I 0.730
NONO Homo sapiens ENSG00000147140 D 0.730
NONO Gallus gallus ENSGALG00000005507 I 0.730
NONO Gorilla gorilla ENSGGOG00000006194 I 0.730
NONO Loxodonta africana ENSLAFG00000013422 I 0.730
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.730
NONO Microcebus murinus ENSMICG00000000232 I 0.730
NONO Myotis lucifugus ENSMLUG00000002489 I 0.730
NONO Macaca mulatta ENSMMUG00000020481 I 0.730
ENSMPUG00000004937 Mustela putorius furo ENSMPUG00000004937 I 0.730
Nono Mus musculus ENSMUSG00000031311 I 0.730
ENSNLEG00000001278 Nomascus leucogenys ENSNLEG00000001278 I 0.730
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 0.730
NONO Otolemur garnettii ENSOGAG00000004834 I 0.730
ENSPANG00000013979 Papio anubis ENSPANG00000013979 I 0.730
NONO Procavia capensis ENSPCAG00000002541 I 0.730
ENSPPYG00000020451 Pongo abelii ENSPPYG00000020451 I 0.730
NONO Pan troglodytes ENSPTRG00000022010 I 0.730
NONO Pteropus vampyrus ENSPVAG00000016503 I 0.730
Nono Rattus norvegicus ENSRNOG00000003689 I 0.730
NONO Sus scrofa ENSSSCG00000023245 I 0.730
ENSSTOG00000015869 Ictidomys tridecemlineatus ENSSTOG00000015869 I 0.730
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.730
NONO Tursiops truncatus ENSTTRG00000009605 I 0.730
NONO Vicugna pacos ENSVPAG00000002272 I 0.730
Afo_R007329 Aptenodytes forsteri Afo_R007329 I 0.730
Brh_R000687 Buceros rhinoceros Brh_R000687 I 0.730
ENSBTAP00000016122-D1 Bos grunniens ENSBTAP00000016122-D1 I 0.730
ENSP00000276079 Macaca fascicularis ENSP00000276079 I 0.730
Myotis_brandtii_NONO_10007307 Myotis brandtii Myotis_brandtii_NONO_10007307 I 0.730
Ogr12033 Ophisaurus gracilis Ogr12033 I 0.730
Pvit_05344 Pogona vitticeps Pvit_05344 I 0.730
ENSAMXG00000015717 Astyanax mexicanus ENSAMXG00000015717 I 0.728
nono Xenopus tropicalis XB-GENE-1002494 I 0.723
NONO Anolis carolinensis ENSACAG00000015026 I 0.723
ENSCPOG00000023605 Cavia porcellus ENSCPOG00000023605 I 0.723
ENSMEUG00000004294 Macropus eugenii ENSMEUG00000004294 I 0.723
NONO Monodelphis domestica ENSMODG00000004445 I 0.723
ENSOARG00000016966 Ovis aries ENSOARG00000016966 I 0.723
NONO Sorex araneus ENSSARG00000007959 I 0.723
ENSSHAG00000010195 Sarcophilus harrisii ENSSHAG00000010195 I 0.723
ENSXMAG00000007929 Xiphophorus maculatus ENSXMAG00000007929 I 0.723
ENSAMXG00000006846 Astyanax mexicanus ENSAMXG00000006846 I 0.721
Aan_R015248 Calypte anna Aan_R015248 I 0.716
pspc1 Danio rerio ENSDARG00000006621 I 0.714
nono Danio rerio ENSDARG00000020482 I 0.714
ENSLACG00000000598 Latimeria chalumnae ENSLACG00000000598 I 0.714
Ogr00865 Ophisaurus gracilis Ogr00865 I 0.707
Gfo_R003471 Geospiza fortis Gfo_R003471 I 0.703
pspc1 Gasterosteus aculeatus ENSGACG00000014901 I 0.701
ENSORLG00000004232 Oryzias latipes ENSORLG00000004232 I 0.701