Myotis_brandtii_SFPQ_10028873 (Myotis brandtii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 Myotis_brandtii_SFPQ_10028873 T119458_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
Myotis_brandtii_SFPQ_10028873
M17566_2.00		 Myotis brandtii NGURGKKU JPLE
Sasse et al.(2025)
RM_Myo.bra_Myotis_brandtii_SFPQ_10028873 		0.008

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.993
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.993
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.993
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.993
NONO
M00507_2.00 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
0.736
NONO
M00505_2.00 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
0.736
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.008
(88.25%)

RNA Binding Domains

Protein ID Domain From To Sequence
Myotis_brandtii_SFPQ_10028873 RRM 27 104
Myotis_brandtii_SFPQ_10028873 RRM 101 169

RNA contacting residues

Links

Other RRM family RBPs
Other Myotis brandtii RBPs

189 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.993
SFPQ Bos taurus ENSBTAG00000016328 I 0.993
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.993
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.993
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.993
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.993
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.993
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.993
SFPQ Echinops telfairi ENSETEG00000001095 I 0.993
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.993
SFPQ Homo sapiens ENSG00000116560 D 0.993
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.993
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.993
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.993
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.993
Sfpq Mus musculus ENSMUSG00000028820 I 0.993
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.993
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.993
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.993
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.993
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.993
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.993
SFPQ Procavia capensis ENSPCAG00000006164 I 0.993
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.993
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.993
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.993
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.993
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.993
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.993
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.993
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.986
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.986
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.986
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.986
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.986
Tal_R009770 Tyto alba Tal_R009770 I 0.973
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.973
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.973
Aan_R015520 Calypte anna Aan_R015520 I 0.973
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.973
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.973
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.973
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.973
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.966
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.966
SFPQ Gallus gallus ENSGALG00000002514 I 0.959
SFPQ Anolis carolinensis ENSACAG00000013307 I 0.952
ENSCAFG00000018271 Canis familiaris ENSCAFG00000018271 I 0.946
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.946
SFPQ Pteropus vampyrus ENSPVAG00000001865 I 0.932
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.912
sfpq Takifugu rubripes ENSTRUG00000003783 I 0.891
ENSLACG00000014728 Latimeria chalumnae ENSLACG00000014728 I 0.886
sfpq Xenopus tropicalis XB-GENE-5968416 I 0.884
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.878
ENSCAFG00000017608 Canis familiaris ENSCAFG00000017608 I 0.872
SFPQ Macaca mulatta ENSMMUG00000019154 I 0.850
sfpq Tetraodon nigroviridis ENSTNIG00000011331 I 0.849
ENSGMOG00000011950 Gadus morhua ENSGMOG00000011950 I 0.833
sfpq Gasterosteus aculeatus ENSGACG00000002034 I 0.832
ENSAMXG00000011538 Astyanax mexicanus ENSAMXG00000011538 I 0.830
ENSXMAG00000016391 Xiphophorus maculatus ENSXMAG00000016391 I 0.804
ENSGMOG00000011957 Gadus morhua ENSGMOG00000011957 I 0.803
sfpq Oryzias latipes ENSORLG00000007459 I 0.801
ENSONIG00000017737 Oreochromis niloticus ENSONIG00000017737 I 0.797
ENSPFOG00000003127 Poecilia formosa ENSPFOG00000003127 I 0.797
Ogr05221 Ophisaurus gracilis Ogr05221 I 0.782
Pvit_12920 Pogona vitticeps Pvit_12920 I 0.782
Tal_R009732 Tyto alba Tal_R009732 I 0.782
pspc1 Xenopus tropicalis XB-GENE-492866 I 0.782
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.782
ENSFALG00000008750 Ficedula albicollis ENSFALG00000008750 I 0.782
PSPC1 Gallus gallus ENSGALG00000017142 I 0.782
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.782
Aan_R001274 Calypte anna Aan_R001274 I 0.782
Afo_R008576 Aptenodytes forsteri Afo_R008576 I 0.782
Brh_R000965 Buceros rhinoceros Brh_R000965 I 0.782
sfpq Danio rerio ENSDARG00000011564 I 0.775
ENSCHOG00000009131 Choloepus hoffmanni ENSCHOG00000009131 I 0.769
ENSLACG00000010762 Latimeria chalumnae ENSLACG00000010762 I 0.762
Alligator_sinensis_CCG002824.1 Alligator sinensis Alligator_sinensis_CCG002824.1 I 0.758
ENSAMEG00000017420 Ailuropoda melanoleuca ENSAMEG00000017420 I 0.755
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.755
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.755
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.755
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 I 0.755
PSPC1 Felis catus ENSFCAG00000027841 I 0.755
PSPC1 Homo sapiens ENSG00000121390 I 0.755
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.755
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.755
ENSMEUG00000000476 Macropus eugenii ENSMEUG00000000476 I 0.755
ENSMGAG00000004237 Meleagris gallopavo ENSMGAG00000004237 I 0.755
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.755
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.755
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.755
ENSMPUG00000013347 Mustela putorius furo ENSMPUG00000013347 I 0.755
Pspc1 Mus musculus ENSMUSG00000021938 I 0.755
ENSNLEG00000001294 Nomascus leucogenys ENSNLEG00000001294 I 0.755
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.755
PSPC1 Otolemur garnettii ENSOGAG00000012643 I 0.755
ENSPANG00000001992 Papio anubis ENSPANG00000001992 I 0.755
ENSPPYG00000005186 Pongo abelii ENSPPYG00000005186 I 0.755
ENSPSIG00000005168 Pelodiscus sinensis ENSPSIG00000005168 I 0.755
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.755
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.755
PSPC1 Sorex araneus ENSSARG00000000888 I 0.755
ENSSHAG00000004696 Sarcophilus harrisii ENSSHAG00000004696 I 0.755
ENSSTOG00000026833 Ictidomys tridecemlineatus ENSSTOG00000026833 I 0.755
PSPC1 Bos taurus ENSBTAG00000003934 I 0.748
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.748
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.748
ENSOARG00000014163 Ovis aries ENSOARG00000014163 I 0.748
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.748
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.748
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.748
ENSBTAP00000005134-D1 Bos grunniens ENSBTAP00000005134-D1 I 0.748
ENSPSIG00000010678 Pelodiscus sinensis ENSPSIG00000010678 I 0.743
Alligator_sinensis_CCG000628.3 Alligator sinensis Alligator_sinensis_CCG000628.3 I 0.743
Cmyd_10013139 Chelonia mydas Cmyd_10013139 I 0.743
ENSLOCG00000010832 Lepisosteus oculatus ENSLOCG00000010832 I 0.741
ENSLOCG00000014739 Lepisosteus oculatus ENSLOCG00000014739 I 0.741
Ogr12033 Ophisaurus gracilis Ogr12033 I 0.736
Pvit_05344 Pogona vitticeps Pvit_05344 I 0.736
Tal_R004102 Tyto alba Tal_R004102 I 0.736
ENSAMEG00000016057 Ailuropoda melanoleuca ENSAMEG00000016057 I 0.736
ENSAPLG00000002642 Anas platyrhynchos ENSAPLG00000002642 I 0.736
NONO Bos taurus ENSBTAG00000012152 I 0.736
ENSCAFG00000003207 Canis familiaris ENSCAFG00000003207 I 0.736
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 0.736
ENSCJAG00000036744 Callithrix jacchus ENSCJAG00000036744 I 0.736
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 0.736
ENSDNOG00000003267 Dasypus novemcinctus ENSDNOG00000003267 I 0.736
NONO Equus caballus ENSECAG00000008502 I 0.736
NONO Erinaceus europaeus ENSEEUG00000014404 I 0.736
ENSFALG00000011765 Ficedula albicollis ENSFALG00000011765 I 0.736
NONO Felis catus ENSFCAG00000014807 I 0.736
NONO Homo sapiens ENSG00000147140 D 0.736
NONO Gallus gallus ENSGALG00000005507 I 0.736
NONO Gorilla gorilla ENSGGOG00000006194 I 0.736
NONO Loxodonta africana ENSLAFG00000013422 I 0.736
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.736
NONO Microcebus murinus ENSMICG00000000232 I 0.736
NONO Myotis lucifugus ENSMLUG00000002489 I 0.736
NONO Macaca mulatta ENSMMUG00000020481 I 0.736
ENSMPUG00000004937 Mustela putorius furo ENSMPUG00000004937 I 0.736
Nono Mus musculus ENSMUSG00000031311 I 0.736
ENSNLEG00000001278 Nomascus leucogenys ENSNLEG00000001278 I 0.736
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 0.736
NONO Otolemur garnettii ENSOGAG00000004834 I 0.736
ENSPANG00000013979 Papio anubis ENSPANG00000013979 I 0.736
NONO Procavia capensis ENSPCAG00000002541 I 0.736
ENSPFOG00000003362 Poecilia formosa ENSPFOG00000003362 I 0.736
ENSPPYG00000020451 Pongo abelii ENSPPYG00000020451 I 0.736
NONO Pan troglodytes ENSPTRG00000022010 I 0.736
NONO Pteropus vampyrus ENSPVAG00000016503 I 0.736
Nono Rattus norvegicus ENSRNOG00000003689 I 0.736
NONO Sus scrofa ENSSSCG00000023245 I 0.736
ENSSTOG00000015869 Ictidomys tridecemlineatus ENSSTOG00000015869 I 0.736
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.736
NONO Tursiops truncatus ENSTTRG00000009605 I 0.736
NONO Vicugna pacos ENSVPAG00000002272 I 0.736
Afo_R007329 Aptenodytes forsteri Afo_R007329 I 0.736
Brh_R000687 Buceros rhinoceros Brh_R000687 I 0.736
ENSBTAP00000016122-D1 Bos grunniens ENSBTAP00000016122-D1 I 0.736
ENSP00000276079 Macaca fascicularis ENSP00000276079 I 0.736
Myotis_brandtii_NONO_10007307 Myotis brandtii Myotis_brandtii_NONO_10007307 I 0.736
nono.L Xenopus laevis XB-GENE-1002501 I 0.735
ENSAMXG00000015717 Astyanax mexicanus ENSAMXG00000015717 I 0.735
ENSPMAG00000005583 Petromyzon marinus ENSPMAG00000005583 I 0.735
nono Xenopus tropicalis XB-GENE-1002494 I 0.730
ENSCPOG00000023605 Cavia porcellus ENSCPOG00000023605 I 0.730
ENSMEUG00000004294 Macropus eugenii ENSMEUG00000004294 I 0.730
NONO Monodelphis domestica ENSMODG00000004445 I 0.730
ENSOARG00000016966 Ovis aries ENSOARG00000016966 I 0.730
NONO Sorex araneus ENSSARG00000007959 I 0.730
ENSSHAG00000010195 Sarcophilus harrisii ENSSHAG00000010195 I 0.730
ENSAMXG00000006846 Astyanax mexicanus ENSAMXG00000006846 I 0.728
ENSGMOG00000015074 Gadus morhua ENSGMOG00000015074 I 0.728
ENSLACG00000000598 Latimeria chalumnae ENSLACG00000000598 I 0.728
NONO Anolis carolinensis ENSACAG00000015026 I 0.723
ENSXMAG00000007929 Xiphophorus maculatus ENSXMAG00000007929 I 0.723
Aan_R015248 Calypte anna Aan_R015248 I 0.723
pspc1 Danio rerio ENSDARG00000006621 I 0.721
nono Danio rerio ENSDARG00000020482 I 0.721
ENSORLG00000004232 Oryzias latipes ENSORLG00000004232 I 0.714
ENSCJAG00000003136 Callithrix jacchus ENSCJAG00000003136 I 0.703
nono Takifugu rubripes ENSTRUG00000005554 I 0.703
Gfo_R003471 Geospiza fortis Gfo_R003471 I 0.703
Ogr00865 Ophisaurus gracilis Ogr00865 I 0.701