ENSCAFG00000018271 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSCAFG00000018271 T077673_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
ENSCAFG00000018271
M06018_2.00		 Canis familiaris NGURGKKU JPLE
Sasse et al.(2025)
RM_Can.fam_ENSCAFG00000018271 		0.011

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.952
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.952
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.952
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.952
NONO
M00507_2.00 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
0.703
NONO
M00505_2.00 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
0.703
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.011
(88.65%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000026985 RRM 250 327
ENSCAFP00000026985 RRM 324 391

RNA contacting residues

Links

Other RRM family RBPs
Other Canis familiaris RBPs

176 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.952
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.952
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.952
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.952
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.952
SFPQ Echinops telfairi ENSETEG00000001095 I 0.952
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.952
SFPQ Homo sapiens ENSG00000116560 D 0.952
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.952
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.952
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.952
Sfpq Mus musculus ENSMUSG00000028820 I 0.952
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.952
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.952
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.952
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.952
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.952
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.952
SFPQ Procavia capensis ENSPCAG00000006164 I 0.952
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.952
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.952
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.952
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.952
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.952
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.952
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.952
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.952
SFPQ Bos taurus ENSBTAG00000016328 I 0.952
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.952
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.946
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.939
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.939
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.932
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.932
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.932
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.932
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.932
SFPQ Anolis carolinensis ENSACAG00000013307 I 0.932
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.925
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.925
Aan_R015520 Calypte anna Aan_R015520 I 0.925
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.925
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.925
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.925
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.925
Tal_R009770 Tyto alba Tal_R009770 I 0.925
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.925
SFPQ Gallus gallus ENSGALG00000002514 I 0.925
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.905
SFPQ Pteropus vampyrus ENSPVAG00000001865 I 0.891
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.890
sfpq Xenopus tropicalis XB-GENE-5968416 I 0.871
ENSCAFG00000017608 Canis familiaris ENSCAFG00000017608 I 0.857
sfpq Takifugu rubripes ENSTRUG00000003783 I 0.850
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.844
ENSLACG00000014728 Latimeria chalumnae ENSLACG00000014728 I 0.839
SFPQ Macaca mulatta ENSMMUG00000019154 I 0.836
sfpq Tetraodon nigroviridis ENSTNIG00000011331 I 0.829
ENSAMXG00000011538 Astyanax mexicanus ENSAMXG00000011538 I 0.810
ENSGMOG00000011950 Gadus morhua ENSGMOG00000011950 I 0.800
sfpq Gasterosteus aculeatus ENSGACG00000002034 I 0.799
ENSXMAG00000016391 Xiphophorus maculatus ENSXMAG00000016391 I 0.784
ENSONIG00000017737 Oreochromis niloticus ENSONIG00000017737 I 0.778
ENSPFOG00000003127 Poecilia formosa ENSPFOG00000003127 I 0.777
ENSGMOG00000011957 Gadus morhua ENSGMOG00000011957 I 0.770
sfpq Oryzias latipes ENSORLG00000007459 I 0.768
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.753
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.753
ENSOARG00000014163 Ovis aries ENSOARG00000014163 I 0.753
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.753
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.753
ENSBTAP00000005134-D1 Bos grunniens ENSBTAP00000005134-D1 I 0.753
PSPC1 Bos taurus ENSBTAG00000003934 I 0.753
sfpq Danio rerio ENSDARG00000011564 I 0.750
ENSFALG00000008750 Ficedula albicollis ENSFALG00000008750 I 0.748
PSPC1 Gallus gallus ENSGALG00000017142 I 0.748
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.748
Aan_R001274 Calypte anna Aan_R001274 I 0.748
Afo_R008576 Aptenodytes forsteri Afo_R008576 I 0.748
Brh_R000965 Buceros rhinoceros Brh_R000965 I 0.748
Ogr05221 Ophisaurus gracilis Ogr05221 I 0.748
Pvit_12920 Pogona vitticeps Pvit_12920 I 0.748
Tal_R009732 Tyto alba Tal_R009732 I 0.748
pspc1 Xenopus tropicalis XB-GENE-492866 I 0.748
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.748
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.747
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.747
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.747
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 I 0.747
PSPC1 Felis catus ENSFCAG00000027841 I 0.747
PSPC1 Homo sapiens ENSG00000121390 I 0.747
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.747
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.747
ENSMEUG00000000476 Macropus eugenii ENSMEUG00000000476 I 0.747
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.747
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.747
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.747
ENSMPUG00000013347 Mustela putorius furo ENSMPUG00000013347 I 0.747
Pspc1 Mus musculus ENSMUSG00000021938 I 0.747
ENSNLEG00000001294 Nomascus leucogenys ENSNLEG00000001294 I 0.747
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.747
PSPC1 Otolemur garnettii ENSOGAG00000012643 I 0.747
ENSPANG00000001992 Papio anubis ENSPANG00000001992 I 0.747
ENSPPYG00000005186 Pongo abelii ENSPPYG00000005186 I 0.747
ENSPSIG00000005168 Pelodiscus sinensis ENSPSIG00000005168 I 0.747
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.747
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.747
PSPC1 Sorex araneus ENSSARG00000000888 I 0.747
ENSSHAG00000004696 Sarcophilus harrisii ENSSHAG00000004696 I 0.747
ENSSTOG00000026833 Ictidomys tridecemlineatus ENSSTOG00000026833 I 0.747
ENSAMEG00000017420 Ailuropoda melanoleuca ENSAMEG00000017420 I 0.747
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.740
ENSLOCG00000014739 Lepisosteus oculatus ENSLOCG00000014739 I 0.733
Alligator_sinensis_CCG002824.1 Alligator sinensis Alligator_sinensis_CCG002824.1 I 0.732
ENSCHOG00000009131 Choloepus hoffmanni ENSCHOG00000009131 I 0.728
ENSLACG00000010762 Latimeria chalumnae ENSLACG00000010762 I 0.728
ENSLACG00000000598 Latimeria chalumnae ENSLACG00000000598 I 0.726
nono.L Xenopus laevis XB-GENE-1002501 I 0.726
ENSAMXG00000015717 Astyanax mexicanus ENSAMXG00000015717 I 0.726
ENSMGAG00000004237 Meleagris gallopavo ENSMGAG00000004237 I 0.721
nono Danio rerio ENSDARG00000020482 I 0.719
ENSLOCG00000010832 Lepisosteus oculatus ENSLOCG00000010832 I 0.719
ENSDNOG00000003267 Dasypus novemcinctus ENSDNOG00000003267 I 0.714
NONO Anolis carolinensis ENSACAG00000015026 I 0.714
ENSGMOG00000015074 Gadus morhua ENSGMOG00000015074 I 0.712
ENSFALG00000011765 Ficedula albicollis ENSFALG00000011765 I 0.709
NONO Gallus gallus ENSGALG00000005507 I 0.709
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.709
ENSPFOG00000003362 Poecilia formosa ENSPFOG00000003362 I 0.709
ENSPSIG00000010678 Pelodiscus sinensis ENSPSIG00000010678 I 0.709
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.709
Afo_R007329 Aptenodytes forsteri Afo_R007329 I 0.709
Alligator_sinensis_CCG000628.3 Alligator sinensis Alligator_sinensis_CCG000628.3 I 0.709
Brh_R000687 Buceros rhinoceros Brh_R000687 I 0.709
Cmyd_10013139 Chelonia mydas Cmyd_10013139 I 0.709
Tal_R004102 Tyto alba Tal_R004102 I 0.709
nono Xenopus tropicalis XB-GENE-1002494 I 0.709
ENSAPLG00000002642 Anas platyrhynchos ENSAPLG00000002642 I 0.709
ENSPMAG00000005583 Petromyzon marinus ENSPMAG00000005583 I 0.707
ENSAMXG00000006846 Astyanax mexicanus ENSAMXG00000006846 I 0.707
pspc1 Danio rerio ENSDARG00000006621 I 0.705
ENSCJAG00000036744 Callithrix jacchus ENSCJAG00000036744 I 0.703
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 0.703
NONO Equus caballus ENSECAG00000008502 I 0.703
NONO Erinaceus europaeus ENSEEUG00000014404 I 0.703
NONO Felis catus ENSFCAG00000014807 I 0.703
NONO Homo sapiens ENSG00000147140 D 0.703
NONO Gorilla gorilla ENSGGOG00000006194 I 0.703
NONO Loxodonta africana ENSLAFG00000013422 I 0.703
NONO Microcebus murinus ENSMICG00000000232 I 0.703
NONO Myotis lucifugus ENSMLUG00000002489 I 0.703
NONO Macaca mulatta ENSMMUG00000020481 I 0.703
ENSMPUG00000004937 Mustela putorius furo ENSMPUG00000004937 I 0.703
Nono Mus musculus ENSMUSG00000031311 I 0.703
ENSNLEG00000001278 Nomascus leucogenys ENSNLEG00000001278 I 0.703
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 0.703
NONO Otolemur garnettii ENSOGAG00000004834 I 0.703
ENSPANG00000013979 Papio anubis ENSPANG00000013979 I 0.703
NONO Procavia capensis ENSPCAG00000002541 I 0.703
ENSPPYG00000020451 Pongo abelii ENSPPYG00000020451 I 0.703
NONO Pan troglodytes ENSPTRG00000022010 I 0.703
NONO Pteropus vampyrus ENSPVAG00000016503 I 0.703
Nono Rattus norvegicus ENSRNOG00000003689 I 0.703
NONO Sus scrofa ENSSSCG00000023245 I 0.703
ENSSTOG00000015869 Ictidomys tridecemlineatus ENSSTOG00000015869 I 0.703
NONO Tursiops truncatus ENSTTRG00000009605 I 0.703
NONO Vicugna pacos ENSVPAG00000002272 I 0.703
ENSBTAP00000016122-D1 Bos grunniens ENSBTAP00000016122-D1 I 0.703
ENSP00000276079 Macaca fascicularis ENSP00000276079 I 0.703
Myotis_brandtii_NONO_10007307 Myotis brandtii Myotis_brandtii_NONO_10007307 I 0.703
Ogr12033 Ophisaurus gracilis Ogr12033 I 0.703
Pvit_05344 Pogona vitticeps Pvit_05344 I 0.703
ENSAMEG00000016057 Ailuropoda melanoleuca ENSAMEG00000016057 I 0.703
NONO Bos taurus ENSBTAG00000012152 I 0.703
ENSCAFG00000003207 Canis familiaris ENSCAFG00000003207 I 0.703
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 0.703