Afo_R013931 (Aptenodytes forsteri)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 Afo_R013931 T117499_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
Afo_R013931
M03015_2.00		 Aptenodytes forsteri NGURGKKB JPLE
Sasse et al.(2025)
RM_Apt.for_Afo_R013931 		0.010

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.966
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.966
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.966
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.966
NONO
M00507_2.00 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
0.723
NONO
M00505_2.00 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
0.723
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
RBM28
M00069_2.00 		Homo sapiens GWGUAGD RNAcompete
Ray et al.(2013)
RNCMPT00049 		0.294
(10.20%)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.010
(87.79%)

RNA Binding Domains

Protein ID Domain From To Sequence
Afo_R013931 RRM 18 95
Afo_R013931 RRM 92 160

RNA contacting residues

Links

Other RRM family RBPs
Other Aptenodytes forsteri RBPs

185 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Brh_R010044 Buceros rhinoceros Brh_R010044 I 1.000
Gfo_R008467 Geospiza fortis Gfo_R008467 I 1.000
Tal_R009770 Tyto alba Tal_R009770 I 1.000
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 1.000
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 1.000
Aan_R015520 Calypte anna Aan_R015520 I 1.000
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.993
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.986
SFPQ Gallus gallus ENSGALG00000002514 I 0.986
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.986
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.986
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.986
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.973
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.973
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.973
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.966
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.966
SFPQ Bos taurus ENSBTAG00000016328 I 0.966
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.966
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.966
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.966
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.966
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.966
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.966
SFPQ Echinops telfairi ENSETEG00000001095 I 0.966
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.966
SFPQ Homo sapiens ENSG00000116560 D 0.966
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.966
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.966
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.966
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.966
Sfpq Mus musculus ENSMUSG00000028820 I 0.966
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.966
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.966
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.966
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.966
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.966
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.966
SFPQ Procavia capensis ENSPCAG00000006164 I 0.966
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.966
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.966
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.966
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.966
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.966
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.966
SFPQ Anolis carolinensis ENSACAG00000013307 I 0.939
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.939
ENSCAFG00000018271 Canis familiaris ENSCAFG00000018271 I 0.925
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.918
SFPQ Pteropus vampyrus ENSPVAG00000001865 I 0.905
sfpq Xenopus tropicalis XB-GENE-5968416 I 0.898
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.891
ENSLACG00000014728 Latimeria chalumnae ENSLACG00000014728 I 0.886
sfpq Takifugu rubripes ENSTRUG00000003783 I 0.884
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.884
ENSCAFG00000017608 Canis familiaris ENSCAFG00000017608 I 0.851
sfpq Tetraodon nigroviridis ENSTNIG00000011331 I 0.849
ENSGMOG00000011950 Gadus morhua ENSGMOG00000011950 I 0.840
sfpq Gasterosteus aculeatus ENSGACG00000002034 I 0.839
SFPQ Macaca mulatta ENSMMUG00000019154 I 0.830
ENSAMXG00000011538 Astyanax mexicanus ENSAMXG00000011538 I 0.823
ENSXMAG00000016391 Xiphophorus maculatus ENSXMAG00000016391 I 0.811
ENSGMOG00000011957 Gadus morhua ENSGMOG00000011957 I 0.809
sfpq Oryzias latipes ENSORLG00000007459 I 0.808
ENSPFOG00000003127 Poecilia formosa ENSPFOG00000003127 I 0.804
ENSONIG00000017737 Oreochromis niloticus ENSONIG00000017737 I 0.804
Brh_R000965 Buceros rhinoceros Brh_R000965 I 0.782
Ogr05221 Ophisaurus gracilis Ogr05221 I 0.782
Pvit_12920 Pogona vitticeps Pvit_12920 I 0.782
Tal_R009732 Tyto alba Tal_R009732 I 0.782
pspc1 Xenopus tropicalis XB-GENE-492866 I 0.782
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.782
ENSFALG00000008750 Ficedula albicollis ENSFALG00000008750 I 0.782
PSPC1 Gallus gallus ENSGALG00000017142 I 0.782
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.782
Aan_R001274 Calypte anna Aan_R001274 I 0.782
Afo_R008576 Aptenodytes forsteri Afo_R008576 I 0.782
ENSMGAG00000004237 Meleagris gallopavo ENSMGAG00000004237 I 0.769
Alligator_sinensis_CCG002824.1 Alligator sinensis Alligator_sinensis_CCG002824.1 I 0.765
sfpq Danio rerio ENSDARG00000011564 I 0.762
ENSAMEG00000017420 Ailuropoda melanoleuca ENSAMEG00000017420 I 0.762
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.762
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.762
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.762
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 I 0.762
PSPC1 Felis catus ENSFCAG00000027841 I 0.762
PSPC1 Homo sapiens ENSG00000121390 I 0.762
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.762
ENSLACG00000010762 Latimeria chalumnae ENSLACG00000010762 I 0.762
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.762
ENSMEUG00000000476 Macropus eugenii ENSMEUG00000000476 I 0.762
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.762
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.762
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.762
ENSMPUG00000013347 Mustela putorius furo ENSMPUG00000013347 I 0.762
Pspc1 Mus musculus ENSMUSG00000021938 I 0.762
ENSNLEG00000001294 Nomascus leucogenys ENSNLEG00000001294 I 0.762
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.762
PSPC1 Otolemur garnettii ENSOGAG00000012643 I 0.762
ENSPANG00000001992 Papio anubis ENSPANG00000001992 I 0.762
ENSPPYG00000005186 Pongo abelii ENSPPYG00000005186 I 0.762
ENSPSIG00000005168 Pelodiscus sinensis ENSPSIG00000005168 I 0.762
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.762
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.762
PSPC1 Sorex araneus ENSSARG00000000888 I 0.762
ENSSHAG00000004696 Sarcophilus harrisii ENSSHAG00000004696 I 0.762
ENSSTOG00000026833 Ictidomys tridecemlineatus ENSSTOG00000026833 I 0.762
ENSBTAP00000005134-D1 Bos grunniens ENSBTAP00000005134-D1 I 0.755
PSPC1 Bos taurus ENSBTAG00000003934 I 0.755
ENSCHOG00000009131 Choloepus hoffmanni ENSCHOG00000009131 I 0.755
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.755
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.755
ENSOARG00000014163 Ovis aries ENSOARG00000014163 I 0.755
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.755
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.755
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.755
ENSLOCG00000010832 Lepisosteus oculatus ENSLOCG00000010832 I 0.748
ENSLOCG00000014739 Lepisosteus oculatus ENSLOCG00000014739 I 0.748
ENSAMXG00000015717 Astyanax mexicanus ENSAMXG00000015717 I 0.741
pspc1 Danio rerio ENSDARG00000006621 I 0.741
ENSPMAG00000005583 Petromyzon marinus ENSPMAG00000005583 I 0.741
ENSGMOG00000015074 Gadus morhua ENSGMOG00000015074 I 0.735
Alligator_sinensis_CCG000628.3 Alligator sinensis Alligator_sinensis_CCG000628.3 I 0.730
Cmyd_10013139 Chelonia mydas Cmyd_10013139 I 0.730
ENSPFOG00000003362 Poecilia formosa ENSPFOG00000003362 I 0.730
ENSPSIG00000010678 Pelodiscus sinensis ENSPSIG00000010678 I 0.730
nono.L Xenopus laevis XB-GENE-1002501 I 0.728
Brh_R000687 Buceros rhinoceros Brh_R000687 I 0.723
ENSBTAP00000016122-D1 Bos grunniens ENSBTAP00000016122-D1 I 0.723
ENSP00000276079 Macaca fascicularis ENSP00000276079 I 0.723
Myotis_brandtii_NONO_10007307 Myotis brandtii Myotis_brandtii_NONO_10007307 I 0.723
Ogr12033 Ophisaurus gracilis Ogr12033 I 0.723
Pvit_05344 Pogona vitticeps Pvit_05344 I 0.723
Tal_R004102 Tyto alba Tal_R004102 I 0.723
ENSAMEG00000016057 Ailuropoda melanoleuca ENSAMEG00000016057 I 0.723
ENSAPLG00000002642 Anas platyrhynchos ENSAPLG00000002642 I 0.723
NONO Bos taurus ENSBTAG00000012152 I 0.723
ENSCAFG00000003207 Canis familiaris ENSCAFG00000003207 I 0.723
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 0.723
ENSCJAG00000036744 Callithrix jacchus ENSCJAG00000036744 I 0.723
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 0.723
ENSDNOG00000003267 Dasypus novemcinctus ENSDNOG00000003267 I 0.723
NONO Equus caballus ENSECAG00000008502 I 0.723
NONO Erinaceus europaeus ENSEEUG00000014404 I 0.723
ENSFALG00000011765 Ficedula albicollis ENSFALG00000011765 I 0.723
NONO Felis catus ENSFCAG00000014807 I 0.723
NONO Homo sapiens ENSG00000147140 D 0.723
NONO Gallus gallus ENSGALG00000005507 I 0.723
NONO Gorilla gorilla ENSGGOG00000006194 I 0.723
NONO Loxodonta africana ENSLAFG00000013422 I 0.723
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.723
NONO Microcebus murinus ENSMICG00000000232 I 0.723
NONO Myotis lucifugus ENSMLUG00000002489 I 0.723
NONO Macaca mulatta ENSMMUG00000020481 I 0.723
ENSMPUG00000004937 Mustela putorius furo ENSMPUG00000004937 I 0.723
Nono Mus musculus ENSMUSG00000031311 I 0.723
ENSNLEG00000001278 Nomascus leucogenys ENSNLEG00000001278 I 0.723
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 0.723
NONO Otolemur garnettii ENSOGAG00000004834 I 0.723
ENSPANG00000013979 Papio anubis ENSPANG00000013979 I 0.723
NONO Procavia capensis ENSPCAG00000002541 I 0.723
ENSPPYG00000020451 Pongo abelii ENSPPYG00000020451 I 0.723
NONO Pan troglodytes ENSPTRG00000022010 I 0.723
NONO Pteropus vampyrus ENSPVAG00000016503 I 0.723
Nono Rattus norvegicus ENSRNOG00000003689 I 0.723
NONO Sus scrofa ENSSSCG00000023245 I 0.723
ENSSTOG00000015869 Ictidomys tridecemlineatus ENSSTOG00000015869 I 0.723
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.723
NONO Tursiops truncatus ENSTTRG00000009605 I 0.723
NONO Vicugna pacos ENSVPAG00000002272 I 0.723
Afo_R007329 Aptenodytes forsteri Afo_R007329 I 0.723
ENSAMXG00000006846 Astyanax mexicanus ENSAMXG00000006846 I 0.721
nono Xenopus tropicalis XB-GENE-1002494 I 0.716
NONO Anolis carolinensis ENSACAG00000015026 I 0.716
ENSCPOG00000023605 Cavia porcellus ENSCPOG00000023605 I 0.716
ENSMEUG00000004294 Macropus eugenii ENSMEUG00000004294 I 0.716
NONO Monodelphis domestica ENSMODG00000004445 I 0.716
ENSOARG00000016966 Ovis aries ENSOARG00000016966 I 0.716
NONO Sorex araneus ENSSARG00000007959 I 0.716
ENSSHAG00000010195 Sarcophilus harrisii ENSSHAG00000010195 I 0.716
ENSXMAG00000007929 Xiphophorus maculatus ENSXMAG00000007929 I 0.716
nono Danio rerio ENSDARG00000020482 I 0.714
ENSLACG00000000598 Latimeria chalumnae ENSLACG00000000598 I 0.714
ENSORLG00000004232 Oryzias latipes ENSORLG00000004232 I 0.714
Aan_R015248 Calypte anna Aan_R015248 I 0.709