PK26637.1 (Cannabis sativa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 PK26637.1 T01778_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK26637.1 CCCH ZF 67 93
PK26637.1 CCCH ZF 115 141
PK26637.1 CCCH ZF 165 190
PK26637.1 CCCH ZF 301 327
PK26637.1 CCCH ZF 347 373

Links

Other CCCH ZF family RBPs
Other Cannabis sativa RBPs

18 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30147.m013813 Ricinus communis 30147.m013813 N 0.859
AT3G48440 Arabidopsis thaliana AT3G48440-TAIR-G N 0.748
AT5G63260 Arabidopsis thaliana AT5G63260-TAIR-G N 0.704
cassava531.valid.m1 Manihot esculenta cassava531.valid.m1 N 0.813
Cucsa.391690 Cucumis sativus Cucsa.391690 N 0.822
XM_002864797.1 Arabidopsis lyrata fgenesh2_kg.8__2325__AT5G63260.1 N 0.711
Glyma04g36670.1 Glycine max Glyma04g36670.1 N 0.866
Glyma05g02920.1 Glycine max Glyma05g02920.1 N 0.830
Glyma06g18240.1 Glycine max Glyma06g18240.1 N 0.821
Glyma17g13580.1 Glycine max Glyma17g13580.1 N 0.815
GSVIVG00007563001 Vitis vinifera GSVIVG00007563001 N 0.874
LjSGA_006961.1 Lotus japonicus LjSGA_006961.1 N 0.815
Medtr8g109990 Medicago truncatula Medtr8g109990 N 0.837
mgf000376m Mimulus guttatus mgf000376m N 0.726
mgf013764m Mimulus guttatus mgf013764m N 0.741
B9I3K6_POPTR Populus trichocarpa POPTR_0012s09400 N 0.748
ppa004690m Prunus persica ppa004690m N 0.830
XM_002875858.1 Arabidopsis lyrata scaffold_501792.1 N 0.733