Glyma06g18240.1 (Glycine max)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Glyma06g18240.1 T05409_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma06g18240.1 CCCH ZF 35 61
Glyma06g18240.1 CCCH ZF 67 86
Glyma06g18240.1 CCCH ZF 108 133
Glyma06g18240.1 CCCH ZF 243 269
Glyma06g18240.1 CCCH ZF 289 315

Links

Other CCCH ZF family RBPs
Other Glycine max RBPs

14 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma04g36670.1 Glycine max Glyma04g36670.1 N 0.932
Glyma17g13580.1 Glycine max Glyma17g13580.1 N 0.822
Glyma05g02920.1 Glycine max Glyma05g02920.1 N 0.822
PK26637.1 Cannabis sativa PK26637.1 N 0.821
Medtr8g109990 Medicago truncatula Medtr8g109990 N 0.806
Cucsa.391690 Cucumis sativus Cucsa.391690 N 0.799
LjSGA_006961.1 Lotus japonicus LjSGA_006961.1 N 0.789
30147.m013813 Ricinus communis 30147.m013813 N 0.770
GSVIVG00007563001 Vitis vinifera GSVIVG00007563001 N 0.770
B9I3K6_POPTR Populus trichocarpa POPTR_0012s09400 N 0.742
cassava531.valid.m1 Manihot esculenta cassava531.valid.m1 N 0.739
ppa004690m Prunus persica ppa004690m N 0.733
XM_002875858.1 Arabidopsis lyrata scaffold_501792.1 N 0.712
AT3G48440 Arabidopsis thaliana AT3G48440-TAIR-G N 0.712