Glyma04g36670.1 (Glycine max)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Glyma04g36670.1 T05400_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma04g36670.1 CCCH ZF 234 260
Glyma04g36670.1 CCCH ZF 283 307
Glyma04g36670.1 CCCH ZF 328 353
Glyma04g36670.1 CCCH ZF 463 489
Glyma04g36670.1 CCCH ZF 509 535

Links

Other CCCH ZF family RBPs
Other Glycine max RBPs

16 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma06g18240.1 Glycine max Glyma06g18240.1 N 0.932
PK26637.1 Cannabis sativa PK26637.1 N 0.866
Glyma05g02920.1 Glycine max Glyma05g02920.1 N 0.852
Glyma17g13580.1 Glycine max Glyma17g13580.1 N 0.852
Medtr8g109990 Medicago truncatula Medtr8g109990 N 0.843
Cucsa.391690 Cucumis sativus Cucsa.391690 N 0.836
LjSGA_006961.1 Lotus japonicus LjSGA_006961.1 N 0.827
GSVIVG00007563001 Vitis vinifera GSVIVG00007563001 N 0.815
30147.m013813 Ricinus communis 30147.m013813 N 0.807
ppa004690m Prunus persica ppa004690m N 0.778
cassava531.valid.m1 Manihot esculenta cassava531.valid.m1 N 0.776
B9I3K6_POPTR Populus trichocarpa POPTR_0012s09400 N 0.774
XM_002875858.1 Arabidopsis lyrata scaffold_501792.1 N 0.737
AT3G48440 Arabidopsis thaliana AT3G48440-TAIR-G N 0.737
mgf000376m Mimulus guttatus mgf000376m N 0.711
mgf013764m Mimulus guttatus mgf013764m N 0.711