CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
AFUA_5G13930
(
Aspergillus fumigatus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
CADAFUAG00006431
T02048_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADAFUAP00006431
CCCH ZF
94
119
PKTVLCVFYKQGNCEKGKKCKFSHDL
Links
Other
CCCH ZF
family RBPs
Other
Aspergillus fumigatus
RBPs
133 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
29807.m000475
Ricinus communis
29807.m000475
N
0.000
cassava24191.valid.m1
Manihot esculenta
cassava24191.valid.m1
N
0.000
Cucsa.116130
Cucumis sativus
Cucsa.116130
N
0.000
Glyma05g08160.1
Glycine max
Glyma05g08160.1
N
0.000
GSVIVG00015463001
Vitis vinifera
GSVIVG00015463001
N
0.000
MDP0000128136
Malus x domestica
MDP0000128136
N
0.000
MDP0000231316
Malus x domestica
MDP0000231316
N
0.000
Medtr8g118890
Medicago truncatula
Medtr8g118890
N
0.000
ppa007582m
Prunus persica
ppa007582m
N
0.000