LOC_Os12g16730 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os12g16730 T12521_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os12g16730.1 CCHC ZF 212 229

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

116 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29681.m001358 Ricinus communis 29681.m001358 N 0.000
SZF2 Arabidopsis thaliana AT2G40140-TAIR-G N 0.000
AT2G41900 Arabidopsis thaliana AT2G41900-TAIR-G N 0.000
ATSZF1 Arabidopsis thaliana AT3G55980-TAIR-G N 0.000
AT5G58620 Arabidopsis thaliana AT5G58620-TAIR-G N 0.000
BGIOSIBCE017416 Oryza indica BGIOSIBCE017416 N 0.000
BRADI1G11760 Brachypodium distachyon BRADI1G11760 N 0.000
BRADI2G38247 Brachypodium distachyon BRADI2G38247 N 0.000
BRADI4G05990 Brachypodium distachyon BRADI4G05990 N 0.000
cassava18518.valid.m1 Manihot esculenta cassava18518.valid.m1 N 0.000
cassava23256.valid.m1 Manihot esculenta cassava23256.valid.m1 N 0.000
cassava23386.valid.m1 Manihot esculenta cassava23386.valid.m1 N 0.000
cassava23387.valid.m1 Manihot esculenta cassava23387.valid.m1 N 0.000
cassava36564.valid.m1 Manihot esculenta cassava36564.valid.m1 N 0.000
cassava37850.valid.m1 Manihot esculenta cassava37850.valid.m1 N 0.000
chr2.CM0002.380.nc Lotus japonicus chr2.CM0002.380.nc N 0.000
Cucsa.139290 Cucumis sativus Cucsa.139290 N 0.000
estExt_fgenesh1_pg.C_Chr_04.00010028 Ostreococcus tauri estExt_fgenesh1_pg.C_Chr_04.00010028 N 0.000
estExt_fgenesh1_pg.C_Chr_40023 Ostreococcus lucimarinus estExt_fgenesh1_pg.C_Chr_40023 N 0.000
XM_002876298.1 Arabidopsis lyrata fgenesh2_kg.5__2030__AT3G55980.1 N 0.000
XM_002864537.1 Arabidopsis lyrata fgenesh2_kg.8__1801__AT5G58620.1 N 0.000
Glyma02g39210.1 Glycine max Glyma02g39210.1 N 0.000
Glyma02g46610.1 Glycine max Glyma02g46610.1 N 0.000
Glyma11g27130.1 Glycine max Glyma11g27130.1 N 0.000
Glyma14g01990.1 Glycine max Glyma14g01990.1 N 0.000
Glyma14g37330.1 Glycine max Glyma14g37330.1 N 0.000
Glyma18g06980.1 Glycine max Glyma18g06980.1 N 0.000
GSVIVG00024728001 Vitis vinifera GSVIVG00024728001 N 0.000
GSVIVG00032807001 Vitis vinifera GSVIVG00032807001 N 0.000
LjSGA_116351.1 Lotus japonicus LjSGA_116351.1 N 0.000
LOC_Os05g03760 Oryza sativa LOC_Os05g03760 N 0.000
MDP0000196475 Malus x domestica MDP0000196475 N 0.000
MDP0000320891 Malus x domestica MDP0000320891 N 0.000
MDP0000588193 Malus x domestica MDP0000588193 N 0.000
MDP0000673185 Malus x domestica MDP0000673185 N 0.000
MDP0000678327 Malus x domestica MDP0000678327 N 0.000
MDP0000699611 Malus x domestica MDP0000699611 N 0.000
Medtr3g028690 Medicago truncatula Medtr3g028690 N 0.000
Medtr5g079420 Medicago truncatula Medtr5g079420 N 0.000
Medtr5g090250 Medicago truncatula Medtr5g090250 N 0.000
mgf009145m Mimulus guttatus mgf009145m N 0.000
mgf012825m Mimulus guttatus mgf012825m N 0.000
PK05226.1 Cannabis sativa PK05226.1 N 0.000
PK15838.1 Cannabis sativa PK15838.1 N 0.000
PK25575.1 Cannabis sativa PK25575.1 N 0.000
B9GIG9_POPTR Populus trichocarpa POPTR_0001s25960 N 0.000
POPTR_0008s06940 Populus trichocarpa POPTR_0008s06940 N 0.000
B9HP30_POPTR Populus trichocarpa POPTR_0009s05150 N 0.000
B9HSM9_POPTR Populus trichocarpa POPTR_0010s19520 N 0.000
B9I454_POPTR Populus trichocarpa POPTR_0012s12760 N 0.000
ppa002251m Prunus persica ppa002251m N 0.000
ppa002415m Prunus persica ppa002415m N 0.000
SB09G002390 Sorghum bicolor Sb09g002390 N 0.000