PK01617.1 (Cannabis sativa)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 PK01617.1 T23977_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK01617.1 PUF 690 724
PK01617.1 PUF 726 760
PK01617.1 PUF 762 796
PK01617.1 PUF 798 832
PK01617.1 PUF 834 869
PK01617.1 PUF 871 905
PK01617.1 PUF 907 941
PK01617.1 PUF 954 983

Links

Other PUF family RBPs
Other Cannabis sativa RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30143.m001164 Ricinus communis 30143.m001164 N 0.798
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.754
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.762
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.768
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.768
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.801
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.769
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.773
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.762
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.762
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.758
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.787
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.773
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.769
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.769
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.773
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.773
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.773
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.750
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.761
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.819
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.780
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.791
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.754
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.762
MDP0000191652 Malus x domestica MDP0000191652 N 0.708
MDP0000314338 Malus x domestica MDP0000314338 N 0.798
MDP0000319167 Malus x domestica MDP0000319167 N 0.765
MDP0000776183 Malus x domestica MDP0000776183 N 0.791
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.776
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.758
mgf015234m Mimulus guttatus mgf015234m N 0.776
mgf015734m Mimulus guttatus mgf015734m N 0.780
PK00601.1 Cannabis sativa PK00601.1 N 0.801
PK21390.1 Cannabis sativa PK21390.1 N 0.773
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.798
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.809
ppa000626m Prunus persica ppa000626m N 0.812
ppa000627m Prunus persica ppa000627m N 0.762
SB03G039600 Sorghum bicolor Sb03g039600 N 0.801
SB09G001090 Sorghum bicolor Sb09g001090 N 0.754