PUM1 (Bos taurus)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 ENSBTAG00000018979 T24160_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PUM1
M255_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1182_18411299 		0.996
PUM1
M283_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
309_18776931 		0.996
Pum2
M287_0.6 		Mus musculus UGUANAUARNNNNBBBBSCC SELEX
Cook et al.(2011)
330_11780640 		0.895
Pum2
M286_0.6 		Mus musculus UGUA SELEX
Cook et al.(2011)
329_11780640 		0.895
PUM2
M284_0.6 		Homo sapiens Sequence logo not available GNNNNNNNNNNNUGUA yeast three-hybrid s
Cook et al.(2011)
320_15607425 		0.895
PUM2
M280_0.6 		Homo sapiens Sequence logo not available UGUANAUA PAR-clip
Cook et al.(2011)
278_20371350 		0.895
PUM2
M249_0.6 		Homo sapiens Sequence logo not available UGUAHAUA RIP-chip
Cook et al.(2011)
1147_18776931 		0.895
pum
M100_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00104 		0.781
pum
M099_0.6 		Drosophila melanogaster UGUAMRK RNAcompete
Ray et al.(2013)
RNCMPT00103 		0.781
pum
M285_0.6 		Drosophila melanogaster Sequence logo not available HHUGUAHAUAHDHWDD RIP-chip
Cook et al.(2011)
323_16537387 		0.781
pum
M098_0.6 		Drosophila melanogaster UGUAYAK RNAcompete
Ray et al.(2013)
RNCMPT00102 		0.781
pum
M101_0.6 		Drosophila melanogaster UGUAWDU RNAcompete
Ray et al.(2013)
RNCMPT00105 		0.781
pum
M097_0.6 		Drosophila melanogaster UGUAMAK RNAcompete
Ray et al.(2013)
RNCMPT00101 		0.781
pum
M045_0.6 		Drosophila melanogaster UGUAHAK RNAcompete
Ray et al.(2013)
RNCMPT00046 		0.781
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000025262 PUF 849 883
ENSBTAP00000025262 PUF 885 917
ENSBTAP00000025262 PUF 921 955
ENSBTAP00000025262 PUF 957 991
ENSBTAP00000025262 PUF 993 1027
ENSBTAP00000025262 PUF 1029 1063
ENSBTAP00000025262 PUF 1065 1095
ENSBTAP00000025262 PUF 1111 1142

Links

Other PUF family RBPs
Other Bos taurus RBPs

88 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R020790 Ailuropoda melanoleuca Ame_R020790 N 0.000
RDM1 Bos taurus ENSBTAG00000000030 N 0.000
RDM1 Choloepus hoffmanni ENSCHOG00000010041 N 0.000
LOC100388328 Callithrix jacchus ENSCJAG00000015031 N 0.000
RDM1 Cavia porcellus ENSCPOG00000001495 N 0.000
LOC100063820 Equus caballus ENSECAG00000022182 N 0.000
RDM1 Erinaceus europaeus ENSEEUG00000006127 N 0.000
RDM1 Felis catus ENSFCAG00000003868 N 0.000
RDM1 Homo sapiens ENSG00000187456 N 0.000
RDM1 Gorilla gorilla ENSGGOG00000010584 N 0.000
RDM1 Loxodonta africana ENSLAFG00000029300 N 0.000
RDM1 Macropus eugenii ENSMEUG00000015826 N 0.000
RDM1 Macaca mulatta ENSMMUG00000006847 N 0.000
RDM1 Monodelphis domestica ENSMODG00000011101 N 0.000
Rdm1 Mus musculus ENSMUSG00000010362 N 0.000
RDM1 Oryctolagus cuniculus ENSOCUG00000022704 N 0.000
RDM1 Otolemur garnettii ENSOGAG00000011332 N 0.000
ENSPPYG00000008198 Pongo pygmaeus ENSPPYG00000008198 N 0.000
RDM1 Pan troglodytes ENSPTRG00000009031 N 0.000
RDM1 Pteropus vampyrus ENSPVAG00000001116 N 0.000
Rdm1 Rattus norvegicus ENSRNOG00000020751 N 0.000
ENSSSCG00000017574 Sus scrofa ENSSSCG00000017574 N 0.000
RDM1 Tupaia belangeri ENSTBEG00000010030 N 0.000