VDBG_07004 (Verticillium albo atrum)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 VDBG_07004 T31473_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
VDBG_07004T0 RRM 54 122
VDBG_07004T0 RRM 142 212
VDBG_07004T0 RRM 268 332

Links

Other RRM family RBPs
Other Verticillium albo atrum RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AB00309.1 Alternaria brassicicola AB00309.1 N 0.803
ACLA_023580 Aspergillus clavatus CADACLAG00002187 N 0.833
AFLA_067600 Aspergillus flavus CADAFLAG00008184 N 0.847
AFUA_1G12000 Aspergillus fumigatus CADAFUAG00007354 N 0.707
An08g04280 Aspergillus niger CADANGAG00006749 N 0.828
ANIA_10164 Aspergillus nidulans CADANIAG00001543 N 0.827
AO090001000353 Aspergillus oryzae CADAORAG00000317 N 0.847
ATEG_00398 Aspergillus terreus CADATEAG00007828 N 0.847
NFIA_013530 Neosartorya fischeri CADNFIAG00000800 N 0.837
CHGG_05573 Chaetomium globosum CHGG_05573 N 0.725
CIMG_09023 Coccidioides immitis CIMG_09023 N 0.856
CPSG_01385 Coccidioides posadasii CPSG_01385 N 0.860
EAT81850.2 Phaeosphaeria nodorum EAT81850.2 N 0.808
estExt_fgenesh1_kg.C_40363 Myceliophthora thermophila estExt_fgenesh1_kg.C_40363 N 0.874
estExt_fgenesh1_pg.C_90049 Trichoderma atroviride estExt_fgenesh1_pg.C_90049 N 0.913
estExt_fgenesh3_kg.C_200038 Neurospora discreta estExt_fgenesh3_kg.C_200038 N 0.841
estExt_Genewise1.C_11570 Cochliobolus heterostrophus C5 estExt_Genewise1.C_11570 N 0.803
estExt_Genewise1.C_140496 Mycosphaerella fijiensis estExt_Genewise1.C_140496 N 0.833
estExt_Genewise1Plus.C_11264 Cryphonectria parasitica estExt_Genewise1Plus.C_11264 N 0.884
estExt_Genewise1Plus.C_32201 Thielavia terrestris estExt_Genewise1Plus.C_32201 N 0.874
estExt_Genewise1Plus.C_sca_10_chr8_2_00705 Nectria haematococca estExt_Genewise1Plus.C_sca_10_chr8_2_00705 N 0.922
estExt_GeneWisePlus.C_11433 Trichoderma reesei estExt_GeneWisePlus.C_11433 N 0.927
e_gw1.2.1591.1 Mycosphaerella graminicola e_gw1.2.1591.1 N 0.837
e_gw1.32.97.1 Trichoderma virens e_gw1.32.97.1 N 0.927
fgenesh1_pm.00083_#_553 Aspergillus carbonarius fgenesh1_pm.00083_#_553 N 0.823
FGSG_05417 Fusarium graminearum FGSG_05417 N 0.927
FOXG_09482 Fusarium oxysporum FOXG_09482 N 0.922
FVEG_07111 Fusarium verticillioides FVEG_07111 N 0.922
GLRG_08449 Colletotrichum graminicola GLRG_08449 N 0.932
GSTUMT00010135001 Tuber melanosporum GSTUMT00010135001 N 0.845
HCAG_09244 Histoplasma capsulatum HCAG_09244 N 0.763
MCYG_03737 Microsporum canis MCYG_03737 N 0.841
MGYG_03339 Microsporum gypseum MGYG_03339 N 0.821
NCU07874 Neurospora crassa NCU07874 N 0.894
PABG_03400 Paracoccidioides brasiliensis PABG_03400 N 0.850
Pa_7_10990 Podospora anserina Pa_7_10990 N 0.889
Pc12g15120 Penicillium chrysogenum Pc12g15120 N 0.817
PMAA_098010 Penicillium marneffei PMAA_098010 N 0.827
PTRG_10065 Pyrenophora tritici repentis PTRG_10065 N 0.803
SNOG_10456 Stagonospora nodorum SNOG_10456 N 0.808
SS1G_03339 Sclerotinia sclerotiorum SS1G_03339 N 0.850
TEQG_03955 Trichophyton equinum TEQG_03955 N 0.837
TERG_05178 Trichophyton rubrum TERG_05178 N 0.837
TESG_05056 Trichophyton tonsurans TESG_05056 N 0.708
VDAG_06648 Verticillium dahliae VDAG_06648 N 0.747