CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AB00309.1
(
Alternaria brassicicola
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AB00309.1
T55380_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AB00309.1
RRM
85
161
LYVGGLDPRVTEDVLRQIFETTGHVQSVKIIPDKTASSPSFNSKGFNYGFVEYDDPGAAERGMATLNGRRIHNNEIR
AB00309.1
RRM
182
252
IFVGDLSNEVNDEVLLQAFSTFGPVSEARVMWDMKTGRSRGYGFVAFRDRADADRALSSMDGEWLGSRAIR
AB00309.1
RRM
308
372
CYVGNLTPYTSQSDLVPLFQNFGYVTETRFQSDRGFAFIKMDTHENAAMAICQLNGYNVNGRPLK
Links
Other
RRM
family RBPs
Other
Alternaria brassicicola
RBPs
43 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PTRG_10065
Pyrenophora tritici repentis
PTRG_10065
N
0.991
SNOG_10456
Stagonospora nodorum
SNOG_10456
N
0.986
EAT81850.2
Phaeosphaeria nodorum
EAT81850.2
N
0.986
estExt_Genewise1.C_11570
Cochliobolus heterostrophus C5
estExt_Genewise1.C_11570
N
0.986
e_gw1.2.1591.1
Mycosphaerella graminicola
e_gw1.2.1591.1
N
0.887
CIMG_09023
Coccidioides immitis
CIMG_09023
N
0.887
An08g04280
Aspergillus niger
CADANGAG00006749
N
0.883
CPSG_01385
Coccidioides posadasii
CPSG_01385
N
0.883
fgenesh1_pm.00083_#_553
Aspergillus carbonarius
fgenesh1_pm.00083_#_553
N
0.878
PABG_03400
Paracoccidioides brasiliensis
PABG_03400
N
0.878
MGYG_03339
Microsporum gypseum
MGYG_03339
N
0.874
MCYG_03737
Microsporum canis
MCYG_03737
N
0.873
ACLA_023580
Aspergillus clavatus
CADACLAG00002187
N
0.873
NCU07874
Neurospora crassa
NCU07874
N
0.873
AFLA_067600
Aspergillus flavus
CADAFLAG00008184
N
0.869
AO090001000353
Aspergillus oryzae
CADAORAG00000317
N
0.869
estExt_Genewise1.C_140496
Mycosphaerella fijiensis
estExt_Genewise1.C_140496
N
0.869
NFIA_013530
Neosartorya fischeri
CADNFIAG00000800
N
0.869
ATEG_00398
Aspergillus terreus
CADATEAG00007828
N
0.869
estExt_Genewise1Plus.C_11264
Cryphonectria parasitica
estExt_Genewise1Plus.C_11264
N
0.869
ANIA_10164
Aspergillus nidulans
CADANIAG00001543
N
0.869
TERG_05178
Trichophyton rubrum
TERG_05178
N
0.869
TEQG_03955
Trichophyton equinum
TEQG_03955
N
0.869
GSTUMT00010135001
Tuber melanosporum
GSTUMT00010135001
N
0.869
Pa_7_10990
Podospora anserina
Pa_7_10990
N
0.864
estExt_fgenesh1_kg.C_40363
Myceliophthora thermophila
estExt_fgenesh1_kg.C_40363
N
0.864
estExt_Genewise1Plus.C_32201
Thielavia terrestris
estExt_Genewise1Plus.C_32201
N
0.864
SS1G_03339
Sclerotinia sclerotiorum
SS1G_03339
N
0.859
Pc12g15120
Penicillium chrysogenum
Pc12g15120
N
0.854
estExt_Genewise1Plus.C_sca_10_chr8_2_00705
Nectria haematococca
estExt_Genewise1Plus.C_sca_10_chr8_2_00705
N
0.854
estExt_fgenesh3_kg.C_200038
Neurospora discreta
estExt_fgenesh3_kg.C_200038
N
0.850
e_gw1.32.97.1
Trichoderma virens
e_gw1.32.97.1
N
0.850
PMAA_098010
Penicillium marneffei
PMAA_098010
N
0.850
GLRG_08449
Colletotrichum graminicola
GLRG_08449
N
0.845
estExt_fgenesh1_pg.C_90049
Trichoderma atroviride
estExt_fgenesh1_pg.C_90049
N
0.845
estExt_GeneWisePlus.C_11433
Trichoderma reesei
estExt_GeneWisePlus.C_11433
N
0.840
FVEG_07111
Fusarium verticillioides
FVEG_07111
N
0.836
FOXG_09482
Fusarium oxysporum
FOXG_09482
N
0.836
FGSG_05417
Fusarium graminearum
FGSG_05417
N
0.812
VDBG_07004
Verticillium albo atrum
VDBG_07004
N
0.803
HCAG_09244
Histoplasma capsulatum
HCAG_09244
N
0.765
TESG_05056
Trichophyton tonsurans
TESG_05056
N
0.732
AFUA_1G12000
Aspergillus fumigatus
CADAFUAG00007354
N
0.723