AB00309.1 (Alternaria brassicicola)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AB00309.1 T55380_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AB00309.1 RRM 85 161
AB00309.1 RRM 182 252
AB00309.1 RRM 308 372

Links

Other RRM family RBPs
Other Alternaria brassicicola RBPs

43 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PTRG_10065 Pyrenophora tritici repentis PTRG_10065 N 0.991
SNOG_10456 Stagonospora nodorum SNOG_10456 N 0.986
EAT81850.2 Phaeosphaeria nodorum EAT81850.2 N 0.986
estExt_Genewise1.C_11570 Cochliobolus heterostrophus C5 estExt_Genewise1.C_11570 N 0.986
e_gw1.2.1591.1 Mycosphaerella graminicola e_gw1.2.1591.1 N 0.887
CIMG_09023 Coccidioides immitis CIMG_09023 N 0.887
An08g04280 Aspergillus niger CADANGAG00006749 N 0.883
CPSG_01385 Coccidioides posadasii CPSG_01385 N 0.883
fgenesh1_pm.00083_#_553 Aspergillus carbonarius fgenesh1_pm.00083_#_553 N 0.878
PABG_03400 Paracoccidioides brasiliensis PABG_03400 N 0.878
MGYG_03339 Microsporum gypseum MGYG_03339 N 0.874
MCYG_03737 Microsporum canis MCYG_03737 N 0.873
ACLA_023580 Aspergillus clavatus CADACLAG00002187 N 0.873
NCU07874 Neurospora crassa NCU07874 N 0.873
AFLA_067600 Aspergillus flavus CADAFLAG00008184 N 0.869
AO090001000353 Aspergillus oryzae CADAORAG00000317 N 0.869
estExt_Genewise1.C_140496 Mycosphaerella fijiensis estExt_Genewise1.C_140496 N 0.869
NFIA_013530 Neosartorya fischeri CADNFIAG00000800 N 0.869
ATEG_00398 Aspergillus terreus CADATEAG00007828 N 0.869
estExt_Genewise1Plus.C_11264 Cryphonectria parasitica estExt_Genewise1Plus.C_11264 N 0.869
ANIA_10164 Aspergillus nidulans CADANIAG00001543 N 0.869
TERG_05178 Trichophyton rubrum TERG_05178 N 0.869
TEQG_03955 Trichophyton equinum TEQG_03955 N 0.869
GSTUMT00010135001 Tuber melanosporum GSTUMT00010135001 N 0.869
Pa_7_10990 Podospora anserina Pa_7_10990 N 0.864
estExt_fgenesh1_kg.C_40363 Myceliophthora thermophila estExt_fgenesh1_kg.C_40363 N 0.864
estExt_Genewise1Plus.C_32201 Thielavia terrestris estExt_Genewise1Plus.C_32201 N 0.864
SS1G_03339 Sclerotinia sclerotiorum SS1G_03339 N 0.859
Pc12g15120 Penicillium chrysogenum Pc12g15120 N 0.854
estExt_Genewise1Plus.C_sca_10_chr8_2_00705 Nectria haematococca estExt_Genewise1Plus.C_sca_10_chr8_2_00705 N 0.854
estExt_fgenesh3_kg.C_200038 Neurospora discreta estExt_fgenesh3_kg.C_200038 N 0.850
e_gw1.32.97.1 Trichoderma virens e_gw1.32.97.1 N 0.850
PMAA_098010 Penicillium marneffei PMAA_098010 N 0.850
GLRG_08449 Colletotrichum graminicola GLRG_08449 N 0.845
estExt_fgenesh1_pg.C_90049 Trichoderma atroviride estExt_fgenesh1_pg.C_90049 N 0.845
estExt_GeneWisePlus.C_11433 Trichoderma reesei estExt_GeneWisePlus.C_11433 N 0.840
FVEG_07111 Fusarium verticillioides FVEG_07111 N 0.836
FOXG_09482 Fusarium oxysporum FOXG_09482 N 0.836
FGSG_05417 Fusarium graminearum FGSG_05417 N 0.812
VDBG_07004 Verticillium albo atrum VDBG_07004 N 0.803
HCAG_09244 Histoplasma capsulatum HCAG_09244 N 0.765
TESG_05056 Trichophyton tonsurans TESG_05056 N 0.732
AFUA_1G12000 Aspergillus fumigatus CADAFUAG00007354 N 0.723