CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TEQG_03955
(
Trichophyton equinum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
TEQG_03955
T31042_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
TEQG_03955T0
RRM
104
175
LYVGGLDPRVTEDILKQIFETTGHVQSVKIIPDKNFQSKGLNYGFIEYDDPGAAERAMQTLNGRRVHQSEIR
TEQG_03955T0
RRM
196
266
IFVGDLSNEVNDEVLLQAFSACGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALSSMDGEWLGSRAIR
TEQG_03955T0
RRM
322
386
CYVGNLTPYTTQNDLIPLFQNFGYVVETRFQADRGFAFVKMDTHENAAMAICQLNGYNVNGRPLK
Links
Other
RRM
family RBPs
Other
Trichophyton equinum
RBPs
44 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
TERG_05178
Trichophyton rubrum
TERG_05178
N
1.000
MCYG_03737
Microsporum canis
MCYG_03737
N
0.995
MGYG_03339
Microsporum gypseum
MGYG_03339
N
0.981
CIMG_09023
Coccidioides immitis
CIMG_09023
N
0.981
CPSG_01385
Coccidioides posadasii
CPSG_01385
N
0.971
PABG_03400
Paracoccidioides brasiliensis
PABG_03400
N
0.957
estExt_Genewise1Plus.C_32201
Thielavia terrestris
estExt_Genewise1Plus.C_32201
N
0.938
GSTUMT00010135001
Tuber melanosporum
GSTUMT00010135001
N
0.938
NFIA_013530
Neosartorya fischeri
CADNFIAG00000800
N
0.933
ANIA_10164
Aspergillus nidulans
CADANIAG00001543
N
0.933
PMAA_098010
Penicillium marneffei
PMAA_098010
N
0.933
An08g04280
Aspergillus niger
CADANGAG00006749
N
0.928
NCU07874
Neurospora crassa
NCU07874
N
0.928
fgenesh1_pm.00083_#_553
Aspergillus carbonarius
fgenesh1_pm.00083_#_553
N
0.923
estExt_fgenesh1_kg.C_40363
Myceliophthora thermophila
estExt_fgenesh1_kg.C_40363
N
0.923
ATEG_00398
Aspergillus terreus
CADATEAG00007828
N
0.919
SS1G_03339
Sclerotinia sclerotiorum
SS1G_03339
N
0.918
estExt_Genewise1Plus.C_11264
Cryphonectria parasitica
estExt_Genewise1Plus.C_11264
N
0.913
Pa_7_10990
Podospora anserina
Pa_7_10990
N
0.913
Pc12g15120
Penicillium chrysogenum
Pc12g15120
N
0.913
e_gw1.2.1591.1
Mycosphaerella graminicola
e_gw1.2.1591.1
N
0.910
AFLA_067600
Aspergillus flavus
CADAFLAG00008184
N
0.909
ACLA_023580
Aspergillus clavatus
CADACLAG00002187
N
0.909
AO090001000353
Aspergillus oryzae
CADAORAG00000317
N
0.909
estExt_Genewise1Plus.C_sca_10_chr8_2_00705
Nectria haematococca
estExt_Genewise1Plus.C_sca_10_chr8_2_00705
N
0.899
estExt_Genewise1.C_140496
Mycosphaerella fijiensis
estExt_Genewise1.C_140496
N
0.895
e_gw1.32.97.1
Trichoderma virens
e_gw1.32.97.1
N
0.894
GLRG_08449
Colletotrichum graminicola
GLRG_08449
N
0.889
estExt_fgenesh3_kg.C_200038
Neurospora discreta
estExt_fgenesh3_kg.C_200038
N
0.882
FVEG_07111
Fusarium verticillioides
FVEG_07111
N
0.880
FOXG_09482
Fusarium oxysporum
FOXG_09482
N
0.880
estExt_GeneWisePlus.C_11433
Trichoderma reesei
estExt_GeneWisePlus.C_11433
N
0.880
estExt_fgenesh1_pg.C_90049
Trichoderma atroviride
estExt_fgenesh1_pg.C_90049
N
0.875
SNOG_10456
Stagonospora nodorum
SNOG_10456
N
0.869
estExt_Genewise1.C_11570
Cochliobolus heterostrophus C5
estExt_Genewise1.C_11570
N
0.869
EAT81850.2
Phaeosphaeria nodorum
EAT81850.2
N
0.869
AB00309.1
Alternaria brassicicola
AB00309.1
N
0.869
PTRG_10065
Pyrenophora tritici repentis
PTRG_10065
N
0.859
FGSG_05417
Fusarium graminearum
FGSG_05417
N
0.856
HCAG_09244
Histoplasma capsulatum
HCAG_09244
N
0.851
VDBG_07004
Verticillium albo atrum
VDBG_07004
N
0.837
TESG_05056
Trichophyton tonsurans
TESG_05056
N
0.814
AFUA_1G12000
Aspergillus fumigatus
CADAFUAG00007354
N
0.779
CHGG_05573
Chaetomium globosum
CHGG_05573
N
0.769