CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AFLA_067600
(
Aspergillus flavus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CADAFLAG00008184
T33445_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADAFLAP00008184
RRM
92
164
LYVGGLDQRVTEDILKQIFETTGHVVSVKIIPDKNKFNSKGYNYGFVEFDDPGAAERAMQTLNGRRIHQSEIR
CADAFLAP00008184
RRM
185
255
IFVGDLSNEVNDEILQQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRADADKALGSMDGEWLGSRAIR
CADAFLAP00008184
RRM
311
375
CYVGNLTPYTTQNDLVPLFQNFGYVLETRLQADRGFAFIKMDSHENAAMAICQLNGYNVNGRPLK
Links
Other
RRM
family RBPs
Other
Aspergillus flavus
RBPs
44 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AO090001000353
Aspergillus oryzae
CADAORAG00000317
N
1.000
ATEG_00398
Aspergillus terreus
CADATEAG00007828
N
0.962
ACLA_023580
Aspergillus clavatus
CADACLAG00002187
N
0.962
fgenesh1_pm.00083_#_553
Aspergillus carbonarius
fgenesh1_pm.00083_#_553
N
0.957
An08g04280
Aspergillus niger
CADANGAG00006749
N
0.957
NFIA_013530
Neosartorya fischeri
CADNFIAG00000800
N
0.952
Pc12g15120
Penicillium chrysogenum
Pc12g15120
N
0.947
ANIA_10164
Aspergillus nidulans
CADANIAG00001543
N
0.933
CIMG_09023
Coccidioides immitis
CIMG_09023
N
0.919
CPSG_01385
Coccidioides posadasii
CPSG_01385
N
0.914
MCYG_03737
Microsporum canis
MCYG_03737
N
0.914
PMAA_098010
Penicillium marneffei
PMAA_098010
N
0.909
TEQG_03955
Trichophyton equinum
TEQG_03955
N
0.909
TERG_05178
Trichophyton rubrum
TERG_05178
N
0.909
GSTUMT00010135001
Tuber melanosporum
GSTUMT00010135001
N
0.904
PABG_03400
Paracoccidioides brasiliensis
PABG_03400
N
0.900
GLRG_08449
Colletotrichum graminicola
GLRG_08449
N
0.900
NCU07874
Neurospora crassa
NCU07874
N
0.900
MGYG_03339
Microsporum gypseum
MGYG_03339
N
0.896
estExt_GeneWisePlus.C_11433
Trichoderma reesei
estExt_GeneWisePlus.C_11433
N
0.895
e_gw1.32.97.1
Trichoderma virens
e_gw1.32.97.1
N
0.890
estExt_Genewise1Plus.C_32201
Thielavia terrestris
estExt_Genewise1Plus.C_32201
N
0.890
estExt_fgenesh1_kg.C_40363
Myceliophthora thermophila
estExt_fgenesh1_kg.C_40363
N
0.890
estExt_Genewise1.C_140496
Mycosphaerella fijiensis
estExt_Genewise1.C_140496
N
0.886
e_gw1.2.1591.1
Mycosphaerella graminicola
e_gw1.2.1591.1
N
0.886
estExt_Genewise1Plus.C_sca_10_chr8_2_00705
Nectria haematococca
estExt_Genewise1Plus.C_sca_10_chr8_2_00705
N
0.885
Pa_7_10990
Podospora anserina
Pa_7_10990
N
0.885
estExt_Genewise1Plus.C_11264
Cryphonectria parasitica
estExt_Genewise1Plus.C_11264
N
0.880
SS1G_03339
Sclerotinia sclerotiorum
SS1G_03339
N
0.876
estExt_fgenesh1_pg.C_90049
Trichoderma atroviride
estExt_fgenesh1_pg.C_90049
N
0.876
AB00309.1
Alternaria brassicicola
AB00309.1
N
0.869
FOXG_09482
Fusarium oxysporum
FOXG_09482
N
0.866
FVEG_07111
Fusarium verticillioides
FVEG_07111
N
0.866
estExt_Genewise1.C_11570
Cochliobolus heterostrophus C5
estExt_Genewise1.C_11570
N
0.864
EAT81850.2
Phaeosphaeria nodorum
EAT81850.2
N
0.859
PTRG_10065
Pyrenophora tritici repentis
PTRG_10065
N
0.859
SNOG_10456
Stagonospora nodorum
SNOG_10456
N
0.859
FGSG_05417
Fusarium graminearum
FGSG_05417
N
0.856
estExt_fgenesh3_kg.C_200038
Neurospora discreta
estExt_fgenesh3_kg.C_200038
N
0.855
VDBG_07004
Verticillium albo atrum
VDBG_07004
N
0.847
HCAG_09244
Histoplasma capsulatum
HCAG_09244
N
0.789
AFUA_1G12000
Aspergillus fumigatus
CADAFUAG00007354
N
0.775
TESG_05056
Trichophyton tonsurans
TESG_05056
N
0.752
CHGG_05573
Chaetomium globosum
CHGG_05573
N
0.732