CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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An08g04280
(
Aspergillus niger
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CADANGAG00006749
T33559_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADANGAP00006623
RRM
93
165
LYVGGLDPRVTEDILKQIFETTGHVVSVKIIPDKNKFNSKGYNYGFVEFDDPGAAERAMQTLNGRRIHQSEIR
CADANGAP00006623
RRM
186
256
IFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERSDADKALSSMDGEWLGSRAIR
CADANGAP00006623
RRM
312
376
CYVGNLTPYTTQTDLVPLFQNFGYVIETRLQADRGFAFIKMDTHENAAMAICQLNGYNVNGRPLK
Links
Other
RRM
family RBPs
Other
Aspergillus niger
RBPs
44 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh1_pm.00083_#_553
Aspergillus carbonarius
fgenesh1_pm.00083_#_553
N
0.986
ATEG_00398
Aspergillus terreus
CADATEAG00007828
N
0.967
AFLA_067600
Aspergillus flavus
CADAFLAG00008184
N
0.957
AO090001000353
Aspergillus oryzae
CADAORAG00000317
N
0.957
ANIA_10164
Aspergillus nidulans
CADANIAG00001543
N
0.952
ACLA_023580
Aspergillus clavatus
CADACLAG00002187
N
0.952
NFIA_013530
Neosartorya fischeri
CADNFIAG00000800
N
0.952
CIMG_09023
Coccidioides immitis
CIMG_09023
N
0.938
CPSG_01385
Coccidioides posadasii
CPSG_01385
N
0.933
Pc12g15120
Penicillium chrysogenum
Pc12g15120
N
0.933
TERG_05178
Trichophyton rubrum
TERG_05178
N
0.928
PABG_03400
Paracoccidioides brasiliensis
PABG_03400
N
0.928
TEQG_03955
Trichophyton equinum
TEQG_03955
N
0.928
MCYG_03737
Microsporum canis
MCYG_03737
N
0.923
PMAA_098010
Penicillium marneffei
PMAA_098010
N
0.923
MGYG_03339
Microsporum gypseum
MGYG_03339
N
0.915
estExt_fgenesh1_kg.C_40363
Myceliophthora thermophila
estExt_fgenesh1_kg.C_40363
N
0.914
NCU07874
Neurospora crassa
NCU07874
N
0.914
estExt_Genewise1Plus.C_32201
Thielavia terrestris
estExt_Genewise1Plus.C_32201
N
0.909
GSTUMT00010135001
Tuber melanosporum
GSTUMT00010135001
N
0.909
Pa_7_10990
Podospora anserina
Pa_7_10990
N
0.900
e_gw1.2.1591.1
Mycosphaerella graminicola
e_gw1.2.1591.1
N
0.895
estExt_Genewise1Plus.C_11264
Cryphonectria parasitica
estExt_Genewise1Plus.C_11264
N
0.895
SS1G_03339
Sclerotinia sclerotiorum
SS1G_03339
N
0.895
estExt_Genewise1.C_140496
Mycosphaerella fijiensis
estExt_Genewise1.C_140496
N
0.890
estExt_Genewise1Plus.C_sca_10_chr8_2_00705
Nectria haematococca
estExt_Genewise1Plus.C_sca_10_chr8_2_00705
N
0.890
e_gw1.32.97.1
Trichoderma virens
e_gw1.32.97.1
N
0.885
AB00309.1
Alternaria brassicicola
AB00309.1
N
0.883
GLRG_08449
Colletotrichum graminicola
GLRG_08449
N
0.880
estExt_fgenesh1_pg.C_90049
Trichoderma atroviride
estExt_fgenesh1_pg.C_90049
N
0.876
estExt_GeneWisePlus.C_11433
Trichoderma reesei
estExt_GeneWisePlus.C_11433
N
0.876
PTRG_10065
Pyrenophora tritici repentis
PTRG_10065
N
0.873
estExt_Genewise1.C_11570
Cochliobolus heterostrophus C5
estExt_Genewise1.C_11570
N
0.873
EAT81850.2
Phaeosphaeria nodorum
EAT81850.2
N
0.873
SNOG_10456
Stagonospora nodorum
SNOG_10456
N
0.873
FOXG_09482
Fusarium oxysporum
FOXG_09482
N
0.871
FVEG_07111
Fusarium verticillioides
FVEG_07111
N
0.871
estExt_fgenesh3_kg.C_200038
Neurospora discreta
estExt_fgenesh3_kg.C_200038
N
0.868
FGSG_05417
Fusarium graminearum
FGSG_05417
N
0.847
VDBG_07004
Verticillium albo atrum
VDBG_07004
N
0.828
HCAG_09244
Histoplasma capsulatum
HCAG_09244
N
0.809
AFUA_1G12000
Aspergillus fumigatus
CADAFUAG00007354
N
0.775
TESG_05056
Trichophyton tonsurans
TESG_05056
N
0.771
CHGG_05573
Chaetomium globosum
CHGG_05573
N
0.756