A6MLI3_CALJA (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000014884 T35615_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF5
M357_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
985_9037021 		0.736
SRSF5
M356_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
984_9037021 		0.736
SRSF5
M355_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
983_9037021 		0.736
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.729
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.729
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000027457 RRM 6 68
ENSCJAP00000027476 RRM 6 68
ENSCJAP00000027476 RRM 110 175

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

134 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 1.000
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.992
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 1.000
SRSF5 Canis familiaris ENSCAFG00000016589 I 1.000
SRSF5 Cavia porcellus ENSCPOG00000005949 I 1.000
srsf5b Danio rerio ENSDARG00000027734 I 0.930
SRSF5 Dasypus novemcinctus ENSDNOG00000006160 I 0.705
Srsf5 Dipodomys ordii ENSDORG00000003989 I 0.814
LOC100053264 Equus caballus ENSECAG00000026873 I 1.000
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.992
SRSF5 Felis catus ENSFCAG00000008848 I 1.000
SRSF5 Homo sapiens ENSG00000100650 D 1.000
SRSF5 Gasterosteus aculeatus ENSGACG00000007834 I 0.937
ENSGACG00000011761 Gasterosteus aculeatus ENSGACG00000011761 I 0.822
Q5ZLF9_CHICK Gallus gallus ENSGALG00000009421 I 1.000
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 1.000
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.992
SRSF5 Macropus eugenii ENSMEUG00000001521 N 0.000
SRSF5 Microcebus murinus ENSMICG00000009661 I 0.907
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 1.000
SRSF5 Macaca mulatta ENSMMUG00000022407 I 1.000
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.992
Srsf5 Mus musculus ENSMUSG00000021134 I 1.000
SRSF5 Ornithorhynchus anatinus ENSOANG00000013336 I 0.938
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 1.000
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 1.000
SRSF5 Ochotona princeps ENSOPRG00000008286 I 1.000
SRSF5 Oryzias latipes ENSORLG00000009268 I 0.814
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 1.000
SRSF5 Pan troglodytes ENSPTRG00000006488 I 1.000
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 1.000
SRSF5 Sorex araneus ENSSARG00000001059 I 0.884
SRSF5 Sus scrofa ENSSSCG00000002312 I 1.000
SRSF5 Tupaia belangeri ENSTBEG00000001972 I 0.969
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.992
SRSF5 Tetraodon nigroviridis ENSTNIG00000016411 I 0.922
SRSF5 Takifugu rubripes ENSTRUG00000017811 I 0.922
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 1.000
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 1.000
SRSF5 Vicugna pacos ENSVPAG00000006448 I 1.000
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.977