SRSF5 (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000007834 T37456_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF5
M357_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
985_9037021 		0.739
SRSF5
M356_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
984_9037021 		0.739
SRSF5
M355_0.6 		Homo sapiens Sequence logo not available UGGGAGCRGUYRGCUCGY SELEX
Cook et al.(2011)
983_9037021 		0.739
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000010392 RRM 9 71
ENSGACP00000010392 RRM 189 244
ENSGACP00000010395 RRM 6 68

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

43 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
srsf5b Danio rerio ENSDARG00000027734 I 0.952
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.937
Q5ZLF9_CHICK Gallus gallus ENSGALG00000009421 I 0.937
AAH70967 Xenopus laevis AAH70967 N 0.889
SRSF5 Sorex araneus ENSSARG00000001059 I 0.883
SRSF5 Pteropus vampyrus ENSPVAG00000009828 I 0.875
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.845
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.845
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.845
SRSF5 Tetraodon nigroviridis ENSTNIG00000016411 I 0.837
SRSF5 Takifugu rubripes ENSTRUG00000017811 I 0.837
LOC100053264 Equus caballus ENSECAG00000026873 I 0.837
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.837
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.837
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.837
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.837
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.837
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.837
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.837
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.837
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.837
Srsf5 Mus musculus ENSMUSG00000021134 I 0.837
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.837
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.837
SRSF5 Homo sapiens ENSG00000100650 D 0.837
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.837
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.837
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.837
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.837
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.837
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.837
SRSF5 Felis catus ENSFCAG00000008848 I 0.837
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.829
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.829
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.829
SRSF5 Ornithorhynchus anatinus ENSOANG00000013336 I 0.822
Srsf5 Dipodomys ordii ENSDORG00000003989 I 0.808
SRSF5 Tupaia belangeri ENSTBEG00000001972 I 0.806
SRSF5 Oryzias latipes ENSORLG00000009268 I 0.760
SRSF5 Microcebus murinus ENSMICG00000009661 I 0.744
ENSGACG00000011761 Gasterosteus aculeatus ENSGACG00000011761 I 0.721
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.713
SRSF5 Macropus eugenii ENSMEUG00000001521 N 0.700