SRSF5 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000009268 T40167_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.729
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.729
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000011623 RRM 6 68
ENSORLP00000011623 RRM 112 177
ENSORLP00000011626 RRM 6 68
ENSORLP00000011626 RRM 170 225
ENSORLP00000011627 RRM 6 68

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

113 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSGACG00000011761 Gasterosteus aculeatus ENSGACG00000011761 I 0.969
PACS2 Takifugu rubripes ENSTRUG00000010740 I 0.938
srsf5a Danio rerio ENSDARG00000029818 I 0.915
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.860
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.853
AAH71160 Xenopus laevis AAH71160 I 0.853
AAH44085 Xenopus laevis AAH44085 I 0.845
XP_002200515.1 Taeniopygia guttata ENSTGUG00000011492 I 0.829
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.822
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.822
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.822
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.822
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.814
LOC100053264 Equus caballus ENSECAG00000026873 I 0.814
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.814
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.814
Srsf5 Mus musculus ENSMUSG00000021134 I 0.814
ENSMGAG00000011888 Meleagris gallopavo ENSMGAG00000011888 I 0.814
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.814
SRSF5 Homo sapiens ENSG00000100650 D 0.814
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.814
SRSF5 Felis catus ENSFCAG00000008848 I 0.814
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.814
Q5ZKT4_CHICK Gallus gallus ENSGALG00000009484 I 0.814
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.814
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.814
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.814
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.814
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.814
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.814
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.814
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.814
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.814
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.814
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.814
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.814
Q5ZLF9_CHICK Gallus gallus ENSGALG00000009421 I 0.806
SRSF5 Takifugu rubripes ENSTRUG00000017811 I 0.806
SRSF5 Tetraodon nigroviridis ENSTNIG00000016411 I 0.806
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.806
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.806
srsf5b Danio rerio ENSDARG00000027734 I 0.798
SRSF5 Ornithorhynchus anatinus ENSOANG00000013336 I 0.783
SRSF5 Tupaia belangeri ENSTBEG00000001972 I 0.783
SRSF5 Sorex araneus ENSSARG00000001059 I 0.777
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.775
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.775
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.775
SRSF5 Gasterosteus aculeatus ENSGACG00000007834 I 0.760
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.760
SRSF4 Homo sapiens ENSG00000116350 I 0.760
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.760
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.760
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.760
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.760
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.760
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.760
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.760
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.760
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.760
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.760
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.760
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.760
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.760
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.760
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.760
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.760
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.760
Srsf4 Mus musculus ENSMUSG00000028911 I 0.760
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.752
estExt_Genewise1Plus.C_sca_890186 Lottia gigantea estExt_Genewise1Plus.C_sca_890186 I 0.752
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.752
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.752
SRSF5 Pteropus vampyrus ENSPVAG00000009828 I 0.750
PHUM290500 Pediculus humanus PHUM290500 I 0.736
ISCW010322 Ixodes scapularis ISCW010322 I 0.736
SRSF5 Microcebus murinus ENSMICG00000009661 I 0.736
BGIBMGA010178 Bombyx mori BGIBMGA010178 I 0.736
nasonia_NCBI_hmm368623 Nasonia vitripennis nasonia_NCBI_hmm368623 I 0.736
nasonia_NCBI_hmm370623 Nasonia vitripennis nasonia_NCBI_hmm370623 I 0.736
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.729
GH18528 Drosophila grimshawi FBgn0125995 I 0.729
GF17608 Drosophila ananassae FBgn0094626 I 0.729
GI22065 Drosophila mojavensis FBgn0144794 I 0.729
GL23543 Drosophila persimilis FBgn0161133 I 0.729
GK13948 Drosophila willistoni FBgn0215954 I 0.729
GJ24113 Drosophila virilis FBgn0211197 I 0.729
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.729
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.729
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.729
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.729
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.729
B52 Drosophila melanogaster FBgn0004587 D 0.729
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.721
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.721
Ppa-rsp-1 Pristionchus pacificus PPA18140 N 0.721
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.721
amel4_ncbi_hmm6583 Apis mellifera amel4_ncbi_hmm6583 I 0.721
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.713
ISCW014220 Ixodes scapularis ISCW014220 I 0.713
AGAP004592 Anopheles gambiae AGAP004592 I 0.713
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.713
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.713
62194 Helobdella robusta 62194 I 0.713
ENSCJAG00000031736 Callithrix jacchus ENSCJAG00000031736 N 0.705
ENSCING00000004873 Ciona intestinalis ENSCING00000004873 I 0.705
ENSCING00000012370 Ciona intestinalis ENSCING00000012370 I 0.705
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.705
DGIL_AUG5s17730g6t1 Acyrtosiphon pisum DGIL_AUG5s17730g6t1 I 0.705
ISCW010321 Ixodes scapularis ISCW010321 I 0.705
estExt_fgenesh1_pg.C_3000025 Capitella teleta estExt_fgenesh1_pg.C_3000025 I 0.705
Srsf5 Dipodomys ordii ENSDORG00000003989 I 0.700