ENSGACG00000011761 (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000011761 T37492_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.713
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.713
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000015556 RRM 6 68
ENSGACP00000015556 RRM 109 174

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

108 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SRSF5 Oryzias latipes ENSORLG00000009268 I 0.969
PACS2 Takifugu rubripes ENSTRUG00000010740 I 0.953
srsf5a Danio rerio ENSDARG00000029818 I 0.922
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.891
AAH71160 Xenopus laevis AAH71160 I 0.876
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.876
AAH44085 Xenopus laevis AAH44085 I 0.868
XP_002200515.1 Taeniopygia guttata ENSTGUG00000011492 I 0.837
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.829
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.829
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.829
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.829
SRSF5 Homo sapiens ENSG00000100650 D 0.822
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.822
SRSF5 Felis catus ENSFCAG00000008848 I 0.822
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.822
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.822
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.822
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.822
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.822
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.822
ENSMGAG00000011888 Meleagris gallopavo ENSMGAG00000011888 I 0.822
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.822
LOC100053264 Equus caballus ENSECAG00000026873 I 0.822
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.822
Srsf5 Mus musculus ENSMUSG00000021134 I 0.822
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.822
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.822
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.822
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.822
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.822
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.822
Q5ZKT4_CHICK Gallus gallus ENSGALG00000009484 I 0.822
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.822
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.822
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.822
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.814
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.814
srsf5b Danio rerio ENSDARG00000027734 I 0.814
SRSF5 Tetraodon nigroviridis ENSTNIG00000016411 I 0.814
Q5ZLF9_CHICK Gallus gallus ENSGALG00000009421 I 0.814
SRSF5 Takifugu rubripes ENSTRUG00000017811 I 0.814
SRSF5 Ornithorhynchus anatinus ENSOANG00000013336 I 0.791
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.791
SRSF5 Tupaia belangeri ENSTBEG00000001972 I 0.791
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.760
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.760
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.752
estExt_Genewise1Plus.C_sca_890186 Lottia gigantea estExt_Genewise1Plus.C_sca_890186 I 0.752
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.752
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.752
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.752
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.752
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.752
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.752
Srsf4 Mus musculus ENSMUSG00000028911 I 0.752
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.752
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.752
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.752
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.752
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.752
SRSF4 Homo sapiens ENSG00000116350 I 0.752
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.752
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.752
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.752
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.752
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.752
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.752
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.744
SRSF5 Microcebus murinus ENSMICG00000009661 I 0.744
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.744
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.744
SRSF5 Sorex araneus ENSSARG00000001059 I 0.736
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.729
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.729
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.729
nasonia_NCBI_hmm370623 Nasonia vitripennis nasonia_NCBI_hmm370623 I 0.721
SRSF5 Gasterosteus aculeatus ENSGACG00000007834 I 0.721
nasonia_NCBI_hmm368623 Nasonia vitripennis nasonia_NCBI_hmm368623 I 0.721
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.721
Ppa-rsp-1 Pristionchus pacificus PPA18140 N 0.721
PHUM290500 Pediculus humanus PHUM290500 I 0.721
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.721
BGIBMGA010178 Bombyx mori BGIBMGA010178 I 0.721
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.721
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.721
GF17608 Drosophila ananassae FBgn0094626 I 0.713
GI22065 Drosophila mojavensis FBgn0144794 I 0.713
GL23543 Drosophila persimilis FBgn0161133 I 0.713
GK13948 Drosophila willistoni FBgn0215954 I 0.713
GH18528 Drosophila grimshawi FBgn0125995 I 0.713
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.713
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.713
B52 Drosophila melanogaster FBgn0004587 D 0.713
ISCW010322 Ixodes scapularis ISCW010322 I 0.713
GJ24113 Drosophila virilis FBgn0211197 I 0.713
estExt_Genewise1Plus.C_150169 Daphnia pulex estExt_Genewise1Plus.C_150169 I 0.713
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.713
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.713
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.705
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.705
SRSF5 Pteropus vampyrus ENSPVAG00000009828 I 0.705
srsf4 Xenopus tropicalis ENSXETG00000014380 I 0.705
ENSCING00000012370 Ciona intestinalis ENSCING00000012370 I 0.705
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.705
amel4_ncbi_hmm6583 Apis mellifera amel4_ncbi_hmm6583 I 0.705
ISCW014220 Ixodes scapularis ISCW014220 I 0.705
ENSCING00000004873 Ciona intestinalis ENSCING00000004873 I 0.705