rbm39a (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000011613 T36065_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000022349 RRM 151 219
ENSDARP00000022349 RRM 248 318
ENSDARP00000022349 RRM 440 495

Links

Other RRM family RBPs
Other Danio rerio RBPs

66 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
114532 Helobdella robusta 114532 N 0.701
AAEL005046 Aedes aegypti AAEL005046 N 0.766
AAH75146 Xenopus laevis AAH75146 N 0.879
AAH77813 Xenopus laevis AAH77813 N 0.879
AGAP008433 Anopheles gambiae AGAP008433 N 0.758
amel4_ncbi_hmm11379 Apis mellifera amel4_ncbi_hmm11379 N 0.768
Ame_R004270 Ailuropoda melanoleuca Ame_R004270 N 0.904
CPIJ014704 Culex quinquefasciatus CPIJ014704 N 0.778
CPIJ019416 Culex quinquefasciatus CPIJ019416 N 0.778
CpipJ_CPIJ014704 Culex pipiens CpipJ_CPIJ014704 N 0.778
CpipJ_CPIJ019416 Culex pipiens CpipJ_CPIJ019416 N 0.778
DGIL_AUG5s7518g10t1 Acyrtosiphon pisum DGIL_AUG5s7518g10t1 N 0.755
RBM39 Anolis carolinensis ENSACAG00000006436 N 0.904
Q2HJD8_BOVIN Bos taurus ENSBTAG00000003949 N 0.904
RBM39 Canis familiaris ENSCAFG00000008327 N 0.904
B0KWM7_CALJA Callithrix jacchus ENSCJAG00000017535 N 0.904
RBM39 Cavia porcellus ENSCPOG00000014625 N 0.834
ENSCPOG00000021775 Cavia porcellus ENSCPOG00000021775 N 0.793
rbm39b Danio rerio ENSDARG00000041853 N 0.908
RBM39 Equus caballus ENSECAG00000013423 N 0.904
RBM39 Echinops telfairi ENSETEG00000016295 N 0.798
RBM39 Homo sapiens ENSG00000131051 N 0.904
RBM23 Gasterosteus aculeatus ENSGACG00000002797 N 0.854
RBM23 Gasterosteus aculeatus ENSGACG00000003376 N 0.888
RBM39 Gallus gallus ENSGALG00000001550 N 0.909
RBM39 Gorilla gorilla ENSGGOG00000003950 N 0.879
RBM39 Loxodonta africana ENSLAFG00000010346 N 0.904
RBM39 Meleagris gallopavo ENSMGAG00000001509 N 0.904
RBM39 Microcebus murinus ENSMICG00000001668 N 0.904
RBM39 Monodelphis domestica ENSMODG00000001557 N 0.895
Rbm39 Mus musculus ENSMUSG00000027620 N 0.904
B7NZJ5_RABIT Oryctolagus cuniculus ENSOCUG00000007050 N 0.904
RBM39 Otolemur garnettii ENSOGAG00000011227 N 0.828
RBM23 Oryzias latipes ENSORLG00000009919 N 0.929
RBM23 Oryzias latipes ENSORLG00000010370 N 0.888
RBM39 Procavia capensis ENSPCAG00000008764 N 0.798
ENSPPYG00000010963 Pongo pygmaeus ENSPPYG00000010963 N 0.904
RBM39 Pan troglodytes ENSPTRG00000013449 N 0.904
RBM39 Pteropus vampyrus ENSPVAG00000014944 N 0.904
Rbm39 Rattus norvegicus ENSRNOG00000019848 N 0.904
RBM39 Sorex araneus ENSSARG00000007673 N 0.904
RBM39 Sus scrofa ENSSSCG00000007309 N 0.904
RBM39 Tupaia belangeri ENSTBEG00000017320 N 0.797
RBM39 Taeniopygia guttata ENSTGUG00000003048 N 0.909
RBM23 Tetraodon nigroviridis ENSTNIG00000005223 N 0.832
RBM23 Tetraodon nigroviridis ENSTNIG00000017904 N 0.908
RBM23 Takifugu rubripes ENSTRUG00000011352 N 0.903
RBM39 Tarsius syrichta ENSTSYG00000005605 N 0.904
RBM39 Tursiops truncatus ENSTTRG00000017039 N 0.904
rbm39 Xenopus tropicalis ENSXETG00000007434 N 0.884
estExt_Genewise1.C_sca_90322 Lottia gigantea estExt_Genewise1.C_sca_90322 N 0.768
estExt_Genewise1Plus.C_150014 Daphnia pulex estExt_Genewise1Plus.C_150014 N 0.751
e_gw.57.85.1 Branchiostoma floridae e_gw.57.85.1 N 0.706
CG11266 Drosophila melanogaster FBgn0031883 N 0.742
GA10876-RA Drosophila pseudoobscura FBgn0070932 N 0.737
GF14957 Drosophila ananassae FBgn0091982 N 0.742
GG10454 Drosophila erecta FBgn0102763 N 0.742
GH13506 Drosophila grimshawi FBgn0120982 N 0.740
GI10246 Drosophila mojavensis FBgn0133011 N 0.739
GM16278 Drosophila sechellia FBgn0171194 N 0.742
GD23448 Drosophila simulans FBgn0194830 N 0.742
GJ18017 Drosophila virilis FBgn0205182 N 0.726
GK15272 Drosophila willistoni FBgn0217277 N 0.744
GE14328 Drosophila yakuba FBgn0231943 N 0.742
fgenesh1_pg.scaffold_245000036 Nematostella vectensis fgenesh1_pg.scaffold_245000036 N 0.717
PHUM394230 Pediculus humanus PHUM394230 N 0.773