u2af2a (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000012505 T36068_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
U2AF2
M077_0.6 		Homo sapiens UUUUUYC RNAcompete
Ray et al.(2013)
RNCMPT00079 		0.947
U2af50
M078_0.6 		Drosophila melanogaster UUUUUYY RNAcompete
Ray et al.(2013)
RNCMPT00080 		0.774
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000002857 RRM 144 218
ENSDARP00000002857 RRM 256 326
ENSDARP00000002857 RRM 391 452

Links

Other RRM family RBPs
Other Danio rerio RBPs

58 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
185543 Helobdella robusta 185543 I 0.758
AAEL002818 Aedes aegypti AAEL002818 I 0.779
AAH44032 Xenopus laevis AAH44032 I 0.942
AGAP002908 Anopheles gambiae AGAP002908 I 0.769
amel4_ncbi_hmm5234 Apis mellifera amel4_ncbi_hmm5234 I 0.788
Ame_R015025 Ailuropoda melanoleuca Ame_R015025 I 0.947
BGIBMGA007082 Bombyx mori BGIBMGA007082 I 0.774
CPIJ012850 Culex quinquefasciatus CPIJ012850 I 0.779
CpipJ_CPIJ012850 Culex pipiens CpipJ_CPIJ012850 I 0.779
DGIL_AUG5s12651g2t1 Acyrtosiphon pisum DGIL_AUG5s12651g2t1 I 0.721
DGIL_AUG5s4302g1t1 Acyrtosiphon pisum DGIL_AUG5s4302g1t1 I 0.769
DGIL_AUG5s6719g2t1 Acyrtosiphon pisum DGIL_AUG5s6719g2t1 I 0.769
U2AF2 Anolis carolinensis ENSACAG00000015489 I 0.947
Q24JZ8_BOVIN Bos taurus ENSBTAG00000002830 I 0.942
U2AF2 Canis familiaris ENSCAFG00000002551 I 0.942
ENSCING00000003455 Ciona intestinalis ENSCING00000003455 I 0.757
LOC100400743 Callithrix jacchus ENSCJAG00000017128 I 0.808
U2AF2 Cavia porcellus ENSCPOG00000001582 I 0.947
ENSCSAVG00000006813 Ciona savignyi ENSCSAVG00000006813 I 0.766
u2af2b Danio rerio ENSDARG00000011740 I 0.962
U2af2 Dipodomys ordii ENSDORG00000003250 I 0.808
LOC100050729 Equus caballus ENSECAG00000010110 I 0.947
U2AF2 Felis catus ENSFCAG00000011504 I 0.755
U2AF2 Homo sapiens ENSG00000063244 D 0.947
U2AF2 Gasterosteus aculeatus ENSGACG00000010632 I 0.976
ENSGACG00000014500 Gasterosteus aculeatus ENSGACG00000014500 I 0.867
ENSLAFG00000018056 Loxodonta africana ENSLAFG00000018056 I 0.947
ENSMMUG00000004810 Macaca mulatta ENSMMUG00000004810 I 0.947
XM_001119590.1 Macaca mulatta ENSMMUG00000019197 I 0.812
U2af2 Mus musculus ENSMUSG00000030435 I 0.947
U2AF2 Oryzias latipes ENSORLG00000011545 I 0.962
U2AF2 Pan troglodytes ENSPTRG00000011523 I 0.808
U2AF2 Pteropus vampyrus ENSPVAG00000004540 I 0.938
LOC690372 Rattus norvegicus ENSRNOG00000015914 I 0.947
U2AF2 Tetraodon nigroviridis ENSTNIG00000008106 I 0.981
ENSTNIG00000011257 Tetraodon nigroviridis ENSTNIG00000011257 I 0.848
U2AF2 Takifugu rubripes ENSTRUG00000005514 I 0.976
ENSTRUG00000006885 Takifugu rubripes ENSTRUG00000006885 I 0.875
U2AF2 Tursiops truncatus ENSTTRG00000000987 I 0.947
u2af2 Xenopus tropicalis ENSXETG00000019128 I 0.942
estExt_Genewise1.C_1170024 Capitella teleta estExt_Genewise1.C_1170024 I 0.779
estExt_Genewise1.C_sca_340148 Lottia gigantea estExt_Genewise1.C_sca_340148 I 0.812
U2af50 Drosophila melanogaster FBgn0005411 D 0.774
GA22177-RA Drosophila pseudoobscura FBgn0082156 I 0.774
GF19596 Drosophila ananassae FBgn0096603 I 0.774
GG19328 Drosophila erecta FBgn0111532 I 0.774
GH12033 Drosophila grimshawi FBgn0119512 I 0.764
GI14308 Drosophila mojavensis FBgn0137061 I 0.764
GL15893 Drosophila persimilis FBgn0153497 I 0.774
GM13406 Drosophila sechellia FBgn0168337 I 0.774
GD24494 Drosophila simulans FBgn0195829 I 0.774
GJ19364 Drosophila virilis FBgn0206507 I 0.712
GK10063 Drosophila willistoni FBgn0212078 I 0.774
GE15975 Drosophila yakuba FBgn0233531 I 0.774
fgenesh1_pm.scaffold_8000042 Nematostella vectensis fgenesh1_pm.scaffold_8000042 I 0.746
nasonia_NCBI_hmm415104 Nasonia vitripennis nasonia_NCBI_hmm415104 I 0.793
PHUM460480 Pediculus humanus PHUM460480 I 0.769
Smp_019690 Schistosoma mansoni Smp_019690 I 0.740