CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CNOT4
(
Gorilla gorilla
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGGOG00000000142
T37744_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CNOT4
M147_0.6
Homo sapiens
GACAGA
RNAcompete
Ray et al.(2013)
RNCMPT00156
1.000
e_gw.71.47.1
M233_0.6
Nematostella vectensis
AGAYASA
RNAcompete
Ray et al.(2013)
RNCMPT00278
0.766
Cnot4
M008_0.6
Drosophila melanogaster
ASACAHW
RNAcompete
Ray et al.(2013)
RNCMPT00008
0.727
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGGOP00000000141
RRM
57
133
VFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK
ENSGGOP00000019449
RRM
57
133
VFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK
Links
Other
RRM
family RBPs
Other
Gorilla gorilla
RBPs
69 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAI34826
Xenopus laevis
AAI34826
N
0.000
Ame_R017061
Ailuropoda melanoleuca
Ame_R017061
N
0.000
Q3SYX2_BOVIN
Bos taurus
ENSBTAG00000021039
N
0.000
HNRNPM
Canis familiaris
ENSCAFG00000018524
N
0.000
HNRNPM
Choloepus hoffmanni
ENSCHOG00000013627
N
0.000
HNRNPM
Callithrix jacchus
ENSCJAG00000010802
N
0.000
HNRNPM
Cavia porcellus
ENSCPOG00000015182
N
0.000
HNRNPM
Dasypus novemcinctus
ENSDNOG00000012157
N
0.000
HNRNPM
Equus caballus
ENSECAG00000023868
N
0.000
HNRNPM
Echinops telfairi
ENSETEG00000019712
N
0.000
HNRNPM
Felis catus
ENSFCAG00000015218
N
0.000
HNRNPM
Homo sapiens
ENSG00000099783
N
0.000
HNRNPM
Gasterosteus aculeatus
ENSGACG00000010265
N
0.000
Q5ZL80_CHICK
Gallus gallus
ENSGALG00000000377
N
0.000
HNRNPM
Gorilla gorilla
ENSGGOG00000003498
N
0.000
HNRNPM
Loxodonta africana
ENSLAFG00000013603
N
0.000
HNRNPM
Macropus eugenii
ENSMEUG00000004789
N
0.000
HNRNPM
Meleagris gallopavo
ENSMGAG00000000700
N
0.000
HNRNPM
Microcebus murinus
ENSMICG00000002532
N
0.000
HNRNPM
Myotis lucifugus
ENSMLUG00000006696
N
0.000
HNRNPM
Macaca mulatta
ENSMMUG00000018806
N
0.000
XM_001365870.1
Monodelphis domestica
ENSMODG00000003801
N
0.000
Hnrnpm
Mus musculus
ENSMUSG00000059208
N
0.000
ENSOCUG00000000552
Oryctolagus cuniculus
ENSOCUG00000000552
N
0.000
ENSOCUG00000024611
Oryctolagus cuniculus
ENSOCUG00000024611
N
0.000
HNRNPM
Otolemur garnettii
ENSOGAG00000003234
N
0.000
HNRNPM
Ochotona princeps
ENSOPRG00000001943
N
0.000
HNRNPM
Oryzias latipes
ENSORLG00000005400
N
0.000
HNRNPM
Procavia capensis
ENSPCAG00000009678
N
0.000
ENSPPYG00000009506
Pongo pygmaeus
ENSPPYG00000009506
N
0.000
HNRNPM
Pan troglodytes
ENSPTRG00000010424
N
0.000
Hnrpm
Rattus norvegicus
ENSRNOG00000007921
N
0.000
HNRNPM
Sorex araneus
ENSSARG00000000267
N
0.000
HNRNPM
Sus scrofa
ENSSSCG00000013602
N
0.000
HNRNPM
Spermophilus tridecemlineatus
ENSSTOG00000008112
N
0.000
HNRNPM
Tupaia belangeri
ENSTBEG00000008718
N
0.000
HNRNPM
Tursiops truncatus
ENSTTRG00000009769
N
0.000
hnrnpm
Xenopus tropicalis
ENSXETG00000001777
N
0.000