CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CNOT4
(
Microcebus murinus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMICG00000001667
T38468_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CNOT4
M147_0.6
Homo sapiens
GACAGA
RNAcompete
Ray et al.(2013)
RNCMPT00156
1.000
e_gw.71.47.1
M233_0.6
Nematostella vectensis
AGAYASA
RNAcompete
Ray et al.(2013)
RNCMPT00278
0.766
Cnot4
M008_0.6
Drosophila melanogaster
ASACAHW
RNAcompete
Ray et al.(2013)
RNCMPT00008
0.727
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMICP00000001510
RRM
111
187
VFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK
Links
Other
RRM
family RBPs
Other
Microcebus murinus
RBPs
68 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CC1G_13963
Coprinopsis cinerea
CC1G_13963
N
0.000
estExt_fgenesh2_pg.C_200047
Serpula lacrymans
estExt_fgenesh2_pg.C_200047
N
0.000
estExt_fgenesh2_pg.C_20480
Agaricus bisporus
estExt_fgenesh2_pg.C_20480
N
0.000
estExt_Genewise1.C_220013
Postia placenta
estExt_Genewise1.C_220013
N
0.000
estExt_Genewise1Plus.C_11031
Pleurotus ostreatus
estExt_Genewise1Plus.C_11031
N
0.000
estExt_Genewise1Plus.C_21122
Schizophyllum commune
estExt_Genewise1Plus.C_21122
N
0.000
gwh1.2.40.1
Laccaria bicolor
gwh1.2.40.1
N
0.000