CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TNRC6A
(
Monodelphis domestica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMODG00000016348
T39180_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMODP00000005487
RRM
1654
1718
LVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLPHGNALVRYSSKEEVVKAQKSLHMCVLGNTTIL
ENSMODP00000020434
RRM
1701
1765
LVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLPHGNALVRYSSKEEVVKAQKSLHMCVLGNTTIL
ENSMODP00000020436
RRM
1420
1484
LVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLPHGNALVRYSSKEEVVKAQKSLHMCVLGNTTIL
Links
Other
RRM
family RBPs
Other
Monodelphis domestica
RBPs
117 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BGIOSIBCE011311
Oryza indica
BGIOSIBCE011311
N
0.000
BRADI1G61230
Brachypodium distachyon
BRADI1G61230
N
0.000
BRADI1G61240
Brachypodium distachyon
BRADI1G61240
N
0.000
cassava42739.valid.m1
Manihot esculenta
cassava42739.valid.m1
N
0.000
cassava42740.valid.m1
Manihot esculenta
cassava42740.valid.m1
N
0.000
cassava42741.valid.m1
Manihot esculenta
cassava42741.valid.m1
N
0.000
cassava42742.valid.m1
Manihot esculenta
cassava42742.valid.m1
N
0.000
Cucsa.158200
Cucumis sativus
Cucsa.158200
N
0.000
Glyma19g02840.1
Glycine max
Glyma19g02840.1
N
0.000
GRMZM2G084540
Zea mays
GRMZM2G084540
N
0.000
GRMZM2G126120
Zea mays
GRMZM2G126120
N
0.000
GSVIVG00011439001
Vitis vinifera
GSVIVG00011439001
N
0.000
GSVIVG00019958001
Vitis vinifera
GSVIVG00019958001
N
0.000
LOC_Os03g25970
Oryza sativa
LOC_Os03g25970
N
0.000
MDP0000573228
Malus x domestica
MDP0000573228
N
0.000
Medtr6g013130
Medicago truncatula
Medtr6g013130
N
0.000
mgf007265m
Mimulus guttatus
mgf007265m
N
0.000
mgf011898m
Mimulus guttatus
mgf011898m
N
0.000
PDK_20s1316613g001
Phoenix dactylifera
PDK_20s1316613g001
N
0.000
ppa003758m
Prunus persica
ppa003758m
N
0.000
Sb01g034070
Sorghum bicolor
Sb01g034070
N
0.000