Medtr6g013130 (Medicago truncatula)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 Medtr6g013130 T21431_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr6g013130.1 KH 48 106
Medtr6g013130.1 KH 145 212
Medtr6g013130.1 KH 290 345
Medtr6g013130.1 KH 375 442
Medtr6g013130.2 KH 48 106
Medtr6g013130.2 KH 145 212
Medtr6g013130.2 KH 290 345
Medtr6g013130.2 KH 375 442

Links

Other KH family RBPs
Other Medicago truncatula RBPs

29 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma19g02840.1 Glycine max Glyma19g02840.1 N 0.866
chr1.CM0141.280.nc Lotus japonicus chr1.CM0141.280.nc N 0.858
LjSGA_002278.2 Lotus japonicus LjSGA_002278.2 N 0.854
Glyma09g37070.1 Glycine max Glyma09g37070.1 N 0.849
Glyma18g49600.1 Glycine max Glyma18g49600.1 N 0.849
Medtr7g010360 Medicago truncatula Medtr7g010360 N 0.845
Glyma13g05520.1 Glycine max Glyma13g05520.1 N 0.843
ppa003758m Prunus persica ppa003758m N 0.837
MDP0000573228 Malus x domestica MDP0000573228 N 0.816
GSVIVG00011439001 Vitis vinifera GSVIVG00011439001 N 0.810
cassava42739.valid.m1 Manihot esculenta cassava42739.valid.m1 N 0.794
cassava42740.valid.m1 Manihot esculenta cassava42740.valid.m1 N 0.794
cassava42741.valid.m1 Manihot esculenta cassava42741.valid.m1 N 0.794
cassava42742.valid.m1 Manihot esculenta cassava42742.valid.m1 N 0.794
A9PE42_POPTR Populus trichocarpa POPTR_0017s12170 N 0.794
PK16782.1 Cannabis sativa PK16782.1 N 0.794
mgf007265m Mimulus guttatus mgf007265m N 0.787
mgf011898m Mimulus guttatus mgf011898m N 0.787
B9H0D1_POPTR Populus trichocarpa POPTR_0004s12220 N 0.786
Cucsa.158200 Cucumis sativus Cucsa.158200 N 0.786
GSVIVG00019958001 Vitis vinifera GSVIVG00019958001 N 0.763
XM_002871611.1 Arabidopsis lyrata fgenesh2_kg.6__1509__AT5G15270.1 N 0.747
AT5G15270 Arabidopsis thaliana AT5G15270-TAIR-G N 0.739
Sb01g034070 Sorghum bicolor Sb01g034070 N 0.727
GRMZM2G126120 Zea mays GRMZM2G126120 N 0.723
GRMZM2G084540 Zea mays GRMZM2G084540 N 0.723
BRADI1G61230 Brachypodium distachyon BRADI1G61230 N 0.717
LOC_Os03g25970 Oryza sativa LOC_Os03g25970 N 0.702