CNOT4 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000003727 T40110_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CNOT4
M147_0.6 		Homo sapiens GACAGA RNAcompete
Ray et al.(2013)
RNCMPT00156 		0.987
e_gw.71.47.1
M233_0.6 		Nematostella vectensis AGAYASA RNAcompete
Ray et al.(2013)
RNCMPT00278 		0.753
Cnot4
M008_0.6 		Drosophila melanogaster ASACAHW RNAcompete
Ray et al.(2013)
RNCMPT00008 		0.714
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000004647 RRM 111 187

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

68 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
111136 Helobdella robusta 111136 I 0.831
AAEL006664 Aedes aegypti AAEL006664 I 0.727
AAEL009437 Aedes aegypti AAEL009437 I 0.718
AAH44088 Xenopus laevis AAH44088 I 0.987
AGAP009827 Anopheles gambiae AGAP009827 I 0.753
amel4_ncbi_hmm16010 Tribolium castaneum amel4_ncbi_hmm16010 I 0.818
amel4_ncbi_hmm16010 Apis mellifera amel4_ncbi_hmm16010 I 0.818
amel4_ncbi_hmm18698 Apis mellifera amel4_ncbi_hmm18698 I 0.818
Ame_R016242 Ailuropoda melanoleuca Ame_R016242 I 0.987
Aqu1.226432 Amphimedon queenslandica Aqu1.226432 I 0.701
CPIJ000383 Culex quinquefasciatus CPIJ000383 I 0.740
CPIJ019539 Culex quinquefasciatus CPIJ019539 I 0.740
CpipJ_CPIJ000383 Culex pipiens CpipJ_CPIJ000383 I 0.740
CpipJ_CPIJ019539 Culex pipiens CpipJ_CPIJ019539 I 0.740
DGIL_AUG5s3525g11t1 Acyrtosiphon pisum DGIL_AUG5s3525g11t1 I 0.714
CNOT4 Anolis carolinensis ENSACAG00000011154 I 0.987
Q5BIS2_BOVIN Bos taurus ENSBTAG00000017919 I 0.987
CNOT4 Canis familiaris ENSCAFG00000003223 I 0.987
CNOT4 Choloepus hoffmanni ENSCHOG00000010412 I 0.987
ENSCING00000004364 Ciona intestinalis ENSCING00000004364 I 0.753
CNOT4 Callithrix jacchus ENSCJAG00000012532 I 0.987
CNOT4 Cavia porcellus ENSCPOG00000011526 I 0.987
CNOT4 Danio rerio ENSDARG00000007045 I 0.961
zgc:63566 Danio rerio ENSDARG00000007639 I 0.987
CNOT4 Equus caballus ENSECAG00000020262 I 0.987
CNOT4 Echinops telfairi ENSETEG00000013407 I 0.753
CNOT4 Homo sapiens ENSG00000080802 D 0.987
CNOT4 Gasterosteus aculeatus ENSGACG00000004276 I 0.987
Q5ZJC9_CHICK Gallus gallus ENSGALG00000011682 I 0.987
CNOT4 Gorilla gorilla ENSGGOG00000000142 I 0.987
CNOT4 Loxodonta africana ENSLAFG00000000709 I 0.987
CNOT4 Meleagris gallopavo ENSMGAG00000011788 I 0.987
CNOT4 Microcebus murinus ENSMICG00000001667 I 0.987
CNOT4 Macaca mulatta ENSMMUG00000016181 I 0.987
CNOT4 Monodelphis domestica ENSMODG00000014068 I 0.987
Cnot4 Mus musculus ENSMUSG00000038784 I 0.987
CNOT4 Ornithorhynchus anatinus ENSOANG00000005006 I 0.987
CNOT4 Oryctolagus cuniculus ENSOCUG00000013448 I 0.987
CNOT4 Ochotona princeps ENSOPRG00000001023 I 0.753
ENSPPYG00000018026 Pongo pygmaeus ENSPPYG00000018026 I 0.987
CNOT4 Pan troglodytes ENSPTRG00000019727 I 0.987
CNOT4 Pteropus vampyrus ENSPVAG00000004905 I 0.987
Cnot4 Rattus norvegicus ENSRNOG00000010795 I 0.987
CNOT4 Sorex araneus ENSSARG00000009778 I 0.974
CNOT4 Tupaia belangeri ENSTBEG00000002202 I 0.987
CNOT4 Taeniopygia guttata ENSTGUG00000009161 I 0.987
CNOT4 Tetraodon nigroviridis ENSTNIG00000016000 I 1.000
CNOT4 Takifugu rubripes ENSTRUG00000016861 I 1.000
CNOT4 Tarsius syrichta ENSTSYG00000000893 I 0.987
CNOT4 Tursiops truncatus ENSTTRG00000005122 I 0.987
cnot4 Xenopus tropicalis ENSXETG00000010594 I 0.987
estExt_fgenesh1_pg.C_960014 Capitella teleta estExt_fgenesh1_pg.C_960014 I 0.844
e_gw.71.47.1 Nematostella vectensis e_gw.71.47.1 D 0.753
e_gw1.25.349.1 Lottia gigantea e_gw1.25.349.1 I 0.772
Cnot4 Drosophila melanogaster FBgn0051716 D 0.714
GF15780 Drosophila ananassae FBgn0092804 I 0.714
GG10123 Drosophila erecta FBgn0102434 I 0.714
GH13370 Drosophila grimshawi FBgn0120846 I 0.714
GI18285 Drosophila mojavensis FBgn0141024 I 0.714
GD23693 Drosophila simulans FBgn0195070 I 0.714
GJ21812 Drosophila virilis FBgn0208930 I 0.714
GK18552 Drosophila willistoni FBgn0220550 I 0.714
GE18937 Drosophila yakuba FBgn0236309 I 0.714
nasonia_NCBI_hmm502784 Nasonia vitripennis nasonia_NCBI_hmm502784 I 0.818
NCBI_GNO_5300025 Daphnia pulex NCBI_GNO_5300025 I 0.857
PHUM247100 Pediculus humanus PHUM247100 I 0.727
XP_001179227.1 Strongylocentrotus purpuratus XP_001179227.1 I 0.797
XP_780160.2 Strongylocentrotus purpuratus XP_780160.2 I 0.797