CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
CNOT4
(
Tetraodon nigroviridis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSTNIG00000016000
T42144_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CNOT4
M147_0.6
Homo sapiens
GACAGA
RNAcompete
Ray et al.(2013)
RNCMPT00156
0.987
e_gw.71.47.1
M233_0.6
Nematostella vectensis
AGAYASA
RNAcompete
Ray et al.(2013)
RNCMPT00278
0.753
Cnot4
M008_0.6
Drosophila melanogaster
ASACAHW
RNAcompete
Ray et al.(2013)
RNCMPT00008
0.714
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000019089
RRM
94
170
VFVVGLSQRLADPEVLKRPEYFGRFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK
Links
Other
RRM
family RBPs
Other
Tetraodon nigroviridis
RBPs
68 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
136083
Helobdella robusta
136083
I
0.000
AAEL003979
Aedes aegypti
AAEL003979
I
0.000
amel4_ncbi_hmm2201
Apis mellifera
amel4_ncbi_hmm2201
I
0.000
BGIBMGA005893
Bombyx mori
BGIBMGA005893
I
0.000
CELF6
Anolis carolinensis
ENSACAG00000006079
I
0.000
LOC100391960
Callithrix jacchus
ENSCJAG00000020663
I
0.000
BRUNOL6
Homo sapiens
ENSG00000140488
D
0.000
CELF3
Homo sapiens
ENSG00000159409
I
0.000
HEXA
Macaca mulatta
ENSMMUG00000010687
I
0.000
CELF5
Macaca mulatta
ENSMMUG00000015513
I
0.000
CELF6
Ornithorhynchus anatinus
ENSOANG00000011308
I
0.000
CELF6
Pan troglodytes
ENSPTRG00000034360
I
0.000
CELF3
Tetraodon nigroviridis
ENSTNIG00000001919
I
0.000
ENSXETG00000021745
Xenopus tropicalis
ENSXETG00000021745
I
0.000
GF19661
Drosophila ananassae
FBgn0096668
I
0.000
GG23781
Drosophila erecta
FBgn0115920
I
0.000
GI17947
Drosophila mojavensis
FBgn0140687
I
0.000
GM26796
Drosophila sechellia
FBgn0181649
I
0.000
GD23834
Drosophila simulans
FBgn0195204
I
0.000
fgenesh2_pm.scaffold_186000008
Branchiostoma floridae
fgenesh2_pm.scaffold_186000008
I
0.000
gw1.77.52.1
Daphnia pulex
gw1.77.52.1
I
0.000
ISCW008885
Ixodes scapularis
ISCW008885
I
0.000
ISCW010799
Ixodes scapularis
ISCW010799
I
0.000
NCBI_GNO_268900001
Daphnia pulex
NCBI_GNO_268900001
I
0.000
Ppa-etr-1
Pristionchus pacificus
PPA28330
I
0.000
SNAPOd2T00007754001
Oikopleura dioica
SNAPOd2T00007754001
I
0.000
etr-1
Caenorhabditis elegans
T01D1.2
D
0.000
WUBG_04928
Wuchereria bancrofti
WUBG_04928
I
0.000