CNOT4 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000016000 T42144_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CNOT4
M147_0.6 		Homo sapiens GACAGA RNAcompete
Ray et al.(2013)
RNCMPT00156 		0.987
e_gw.71.47.1
M233_0.6 		Nematostella vectensis AGAYASA RNAcompete
Ray et al.(2013)
RNCMPT00278 		0.753
Cnot4
M008_0.6 		Drosophila melanogaster ASACAHW RNAcompete
Ray et al.(2013)
RNCMPT00008 		0.714
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000019089 RRM 94 170

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

68 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AB09441.1 Alternaria brassicicola AB09441.1 I 0.000
ARB_07912 Arthroderma benhamiae ARB_07912 I 0.000
BC1G_02746 Botrytis cinerea BC1G_02746 I 0.000
BDBG_03382 Blastomyces dermatitidis BDBG_03382 I 0.000
ACLA_082600 Aspergillus clavatus CADACLAG00007506 I 0.000
AFLA_036830 Aspergillus flavus CADAFLAG00003057 I 0.000
AFUA_6G08040 Aspergillus fumigatus CADAFUAG00002290 I 0.000
An11g02050 Aspergillus niger CADANGAG00008541 I 0.000
CADANIAG00004740 Aspergillus nidulans CADANIAG00004740 D 0.000
AO090003000122 Aspergillus oryzae CADAORAG00000798 I 0.000
ATEG_05852 Aspergillus terreus CADATEAG00002953 I 0.000
NFIA_053730 Neosartorya fischeri CADNFIAG00004585 I 0.000
CHGG_00842 Chaetomium globosum CHGG_00842 I 0.000
CIMG_01152 Coccidioides immitis CIMG_01152 I 0.000
CPSG_02060 Coccidioides posadasii CPSG_02060 I 0.000
EAT76715.1 Phaeosphaeria nodorum EAT76715.1 I 0.000
estExt_fgenesh1_pg.C_20919 Myceliophthora thermophila estExt_fgenesh1_pg.C_20919 I 0.000
estExt_fgenesh3_kg.C_70295 Neurospora discreta estExt_fgenesh3_kg.C_70295 I 0.000
estExt_Genewise1.C_320079 Cochliobolus heterostrophus C5 estExt_Genewise1.C_320079 I 0.000
estExt_Genewise1Plus.C_13260 Thielavia terrestris estExt_Genewise1Plus.C_13260 I 0.000
estExt_Genewise1Plus.C_50687 Neurospora tetrasperma estExt_Genewise1Plus.C_50687 I 0.000
e_gw1.1.2591.1 Trichoderma atroviride e_gw1.1.2591.1 I 0.000
e_gw1.3.1071.1 Trichoderma reesei e_gw1.3.1071.1 I 0.000
fgenesh1_pg.sca_1_chr1_3_0000264 Nectria haematococca fgenesh1_pg.sca_1_chr1_3_0000264 I 0.000
fgenesh1_pm.00118_#_519 Aspergillus carbonarius fgenesh1_pm.00118_#_519 I 0.000
FGSG_11902 Fusarium graminearum FGSG_11902 I 0.000
FOXG_00280 Fusarium oxysporum FOXG_00280 I 0.000
FVEG_01237 Fusarium verticillioides FVEG_01237 I 0.000
GSTUMT00010522001 Tuber melanosporum GSTUMT00010522001 I 0.000
gw1.33.170.1 Trichoderma virens gw1.33.170.1 I 0.000
gw1.6.1720.1 Cryphonectria parasitica gw1.6.1720.1 I 0.000
HCAG_05883 Histoplasma capsulatum HCAG_05883 I 0.000
MCYG_08625 Microsporum canis MCYG_08625 I 0.000
MGG_01274 Magnaporthe oryzae MGG_01274 I 0.000
NCU03099 Neurospora crassa NCU03099 I 0.000
PABG_01757 Paracoccidioides brasiliensis PABG_01757 I 0.000
Pa_1_11770 Podospora anserina Pa_1_11770 I 0.000
Pc12g10950 Penicillium chrysogenum Pc12g10950 I 0.000
PMAA_072470 Penicillium marneffei PMAA_072470 I 0.000
PTRG_02274 Pyrenophora tritici repentis PTRG_02274 I 0.000
SNOG_15877 Stagonospora nodorum SNOG_15877 I 0.000
SS1G_09871 Sclerotinia sclerotiorum SS1G_09871 I 0.000
TEQG_04534 Trichophyton equinum TEQG_04534 I 0.000
TERG_02769 Trichophyton rubrum TERG_02769 I 0.000
TESG_08545 Trichophyton tonsurans TESG_08545 I 0.000
TRV_04123 Trichophyton verrucosum TRV_04123 I 0.000
UREG_01087 Uncinocarpus reesii UREG_01087 I 0.000
VDAG_04412 Verticillium dahliae VDAG_04412 I 0.000