CNOT4 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000016000 T42144_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CNOT4
M147_0.6 		Homo sapiens GACAGA RNAcompete
Ray et al.(2013)
RNCMPT00156 		0.987
e_gw.71.47.1
M233_0.6 		Nematostella vectensis AGAYASA RNAcompete
Ray et al.(2013)
RNCMPT00278 		0.753
Cnot4
M008_0.6 		Drosophila melanogaster ASACAHW RNAcompete
Ray et al.(2013)
RNCMPT00008 		0.714
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000019089 RRM 94 170

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

68 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
136083 Helobdella robusta 136083 I 0.000
AAEL003979 Aedes aegypti AAEL003979 I 0.000
amel4_ncbi_hmm2201 Apis mellifera amel4_ncbi_hmm2201 I 0.000
BGIBMGA005893 Bombyx mori BGIBMGA005893 I 0.000
CELF6 Anolis carolinensis ENSACAG00000006079 I 0.000
LOC100391960 Callithrix jacchus ENSCJAG00000020663 I 0.000
BRUNOL6 Homo sapiens ENSG00000140488 D 0.000
CELF3 Homo sapiens ENSG00000159409 I 0.000
HEXA Macaca mulatta ENSMMUG00000010687 I 0.000
CELF5 Macaca mulatta ENSMMUG00000015513 I 0.000
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.000
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.000
CELF3 Tetraodon nigroviridis ENSTNIG00000001919 I 0.000
ENSXETG00000021745 Xenopus tropicalis ENSXETG00000021745 I 0.000
GF19661 Drosophila ananassae FBgn0096668 I 0.000
GG23781 Drosophila erecta FBgn0115920 I 0.000
GI17947 Drosophila mojavensis FBgn0140687 I 0.000
GM26796 Drosophila sechellia FBgn0181649 I 0.000
GD23834 Drosophila simulans FBgn0195204 I 0.000
fgenesh2_pm.scaffold_186000008 Branchiostoma floridae fgenesh2_pm.scaffold_186000008 I 0.000
gw1.77.52.1 Daphnia pulex gw1.77.52.1 I 0.000
ISCW008885 Ixodes scapularis ISCW008885 I 0.000
ISCW010799 Ixodes scapularis ISCW010799 I 0.000
NCBI_GNO_268900001 Daphnia pulex NCBI_GNO_268900001 I 0.000
Ppa-etr-1 Pristionchus pacificus PPA28330 I 0.000
SNAPOd2T00007754001 Oikopleura dioica SNAPOd2T00007754001 I 0.000
etr-1 Caenorhabditis elegans T01D1.2 D 0.000
WUBG_04928 Wuchereria bancrofti WUBG_04928 I 0.000