RBM23 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000017904 T42170_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000021064 RRM 79 147
ENSTNIP00000021064 RRM 176 246
ENSTNIP00000021064 RRM 362 417

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

66 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
114532 Helobdella robusta 114532 N 0.711
AAEL005046 Aedes aegypti AAEL005046 N 0.756
AAH75146 Xenopus laevis AAH75146 N 0.859
AAH77813 Xenopus laevis AAH77813 N 0.869
AGAP008433 Anopheles gambiae AGAP008433 N 0.747
amel4_ncbi_hmm11379 Apis mellifera amel4_ncbi_hmm11379 N 0.763
Ame_R004270 Ailuropoda melanoleuca Ame_R004270 N 0.894
CPIJ014704 Culex quinquefasciatus CPIJ014704 N 0.768
CPIJ019416 Culex quinquefasciatus CPIJ019416 N 0.768
CpipJ_CPIJ014704 Culex pipiens CpipJ_CPIJ014704 N 0.768
CpipJ_CPIJ019416 Culex pipiens CpipJ_CPIJ019416 N 0.768
DGIL_AUG5s7518g10t1 Acyrtosiphon pisum DGIL_AUG5s7518g10t1 N 0.740
RBM39 Anolis carolinensis ENSACAG00000006436 N 0.904
Q2HJD8_BOVIN Bos taurus ENSBTAG00000003949 N 0.894
RBM39 Canis familiaris ENSCAFG00000008327 N 0.894
B0KWM7_CALJA Callithrix jacchus ENSCJAG00000017535 N 0.894
RBM39 Cavia porcellus ENSCPOG00000014625 N 0.829
ENSCPOG00000021775 Cavia porcellus ENSCPOG00000021775 N 0.793
rbm39a Danio rerio ENSDARG00000011613 N 0.908
rbm39b Danio rerio ENSDARG00000041853 N 0.923
RBM39 Equus caballus ENSECAG00000013423 N 0.894
RBM39 Echinops telfairi ENSETEG00000016295 N 0.793
RBM39 Homo sapiens ENSG00000131051 N 0.894
RBM23 Gasterosteus aculeatus ENSGACG00000002797 N 0.942
RBM23 Gasterosteus aculeatus ENSGACG00000003376 N 0.903
RBM39 Gallus gallus ENSGALG00000001550 N 0.898
RBM39 Gorilla gorilla ENSGGOG00000003950 N 0.869
RBM39 Loxodonta africana ENSLAFG00000010346 N 0.894
RBM39 Meleagris gallopavo ENSMGAG00000001509 N 0.893
RBM39 Microcebus murinus ENSMICG00000001668 N 0.894
RBM39 Monodelphis domestica ENSMODG00000001557 N 0.885
Rbm39 Mus musculus ENSMUSG00000027620 N 0.894
B7NZJ5_RABIT Oryctolagus cuniculus ENSOCUG00000007050 N 0.894
RBM39 Otolemur garnettii ENSOGAG00000011227 N 0.818
RBM23 Oryzias latipes ENSORLG00000009919 N 0.923
RBM23 Oryzias latipes ENSORLG00000010370 N 0.980
RBM39 Procavia capensis ENSPCAG00000008764 N 0.793
ENSPPYG00000010963 Pongo pygmaeus ENSPPYG00000010963 N 0.894
RBM39 Pan troglodytes ENSPTRG00000013449 N 0.894
RBM39 Pteropus vampyrus ENSPVAG00000014944 N 0.894
Rbm39 Rattus norvegicus ENSRNOG00000019848 N 0.894
RBM39 Sorex araneus ENSSARG00000007673 N 0.894
RBM39 Sus scrofa ENSSSCG00000007309 N 0.894
RBM39 Tupaia belangeri ENSTBEG00000017320 N 0.782
RBM39 Taeniopygia guttata ENSTGUG00000003048 N 0.898
RBM23 Tetraodon nigroviridis ENSTNIG00000005223 N 0.847
RBM23 Takifugu rubripes ENSTRUG00000011352 N 0.995
RBM39 Tarsius syrichta ENSTSYG00000005605 N 0.894
RBM39 Tursiops truncatus ENSTTRG00000017039 N 0.894
rbm39 Xenopus tropicalis ENSXETG00000007434 N 0.874
estExt_Genewise1.C_sca_90322 Lottia gigantea estExt_Genewise1.C_sca_90322 N 0.763
estExt_Genewise1Plus.C_150014 Daphnia pulex estExt_Genewise1Plus.C_150014 N 0.777
e_gw.57.85.1 Branchiostoma floridae e_gw.57.85.1 N 0.716
CG11266 Drosophila melanogaster FBgn0031883 N 0.732
GA10876-RA Drosophila pseudoobscura FBgn0070932 N 0.737
GF14957 Drosophila ananassae FBgn0091982 N 0.732
GG10454 Drosophila erecta FBgn0102763 N 0.732
GH13506 Drosophila grimshawi FBgn0120982 N 0.730
GI10246 Drosophila mojavensis FBgn0133011 N 0.729
GM16278 Drosophila sechellia FBgn0171194 N 0.732
GD23448 Drosophila simulans FBgn0194830 N 0.732
GJ18017 Drosophila virilis FBgn0205182 N 0.716
GK15272 Drosophila willistoni FBgn0217277 N 0.734
GE14328 Drosophila yakuba FBgn0231943 N 0.732
fgenesh1_pg.scaffold_245000036 Nematostella vectensis fgenesh1_pg.scaffold_245000036 N 0.702
PHUM394230 Pediculus humanus PHUM394230 N 0.758