elavl2 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000009387 T42858_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.825
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.825
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.825
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.801
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.801
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.801
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000020681 RRM 1 35
ENSXETP00000020681 RRM 51 119
ENSXETP00000020681 RRM 204 274
ENSXETP00000020683 RRM 1 35
ENSXETP00000020683 RRM 51 119
ENSXETP00000020683 RRM 189 259

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

119 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA96943 Xenopus laevis AAA96943 I 0.825
AAA96944 Xenopus laevis AAA96944 I 0.755
AAA96945 Xenopus laevis AAA96945 I 0.796
AAH94189 Xenopus laevis AAH94189 I 0.829
AAH99348 Xenopus laevis AAH99348 I 0.796
AAI69769 Xenopus laevis AAI69769 I 0.755
AAI70539 Xenopus laevis AAI70539 I 0.829
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.825
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.755
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.801
CAA59430 Xenopus laevis CAA59430 I 0.821
CBF67567 Xenopus laevis CBF67567 I 0.796
CBU92440 Xenopus laevis CBU92440 I 0.796
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.801
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.750
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.829
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.755
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.801
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.825
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.801
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.755
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.801
ENSCHOG00000006810 Choloepus hoffmanni ENSCHOG00000006810 I 0.795
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.825
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.801
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.801
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.825
ELAVL1 Cavia porcellus ENSCPOG00000011884 I 0.801
elavl3 Danio rerio ENSDARG00000014420 I 0.745
elavl2 Danio rerio ENSDARG00000040732 I 0.791
elavl4 Danio rerio ENSDARG00000045639 I 0.780
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.801
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.745
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.825
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.801
ELAVL2 Equus caballus ENSECAG00000020142 I 0.825
LOC100051268 Equus caballus ENSECAG00000022284 I 0.801
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.801
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.825
ELAVL1 Echinops telfairi ENSETEG00000012985 I 0.795
ELAVL2 Homo sapiens ENSG00000107105 D 0.825
ELAVL4 Homo sapiens ENSG00000162374 D 0.801
ELAVL3 Homo sapiens ENSG00000196361 I 0.755
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.791
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.745
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.806
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.801
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.806
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.801
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.825
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.755
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.801
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.755
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.825
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.801
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.755
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.797
ELAVL2 Microcebus murinus ENSMICG00000001558 I 0.923
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.801
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.801
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.820
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.825
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.801
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.898
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.829
ELAVL3 Monodelphis domestica ENSMODG00000006653 I 0.717
Elavl3 Mus musculus ENSMUSG00000003410 I 0.745
Elavl2 Mus musculus ENSMUSG00000008489 I 0.825
Elavl4 Mus musculus ENSMUSG00000028546 I 0.801
ELAVL2 Ornithorhynchus anatinus ENSOANG00000009634 I 0.712
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.825
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.801
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.755
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.801
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.825
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.801
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.806
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.738
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.791
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.801
ELAVL2 Procavia capensis ENSPCAG00000014998 I 0.750
ELAVL1 Procavia capensis ENSPCAG00000016012 I 0.795
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.801
ENSPPYG00000009583 Pongo pygmaeus ENSPPYG00000009583 N 0.818
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.825
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.801
ELAVL3 Pan troglodytes ENSPTRG00000010506 I 0.736
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.825
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.825
ELAVL4 Pteropus vampyrus ENSPVAG00000003632 I 0.722
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.755
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.825
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.745
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.801
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.825
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.801
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.825
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.755
ELAVL2 Spermophilus tridecemlineatus ENSSTOG00000007792 I 0.901
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.796
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.801
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.806
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.787
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.738
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.868
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.801
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.745
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.801
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.783
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.755
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.820
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.825
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.801
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.796
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.748
ISCW010302 Ixodes scapularis ISCW010302 N 0.750
Q91584 Xenopus laevis Q91584 I 0.755
Q91903 Xenopus laevis Q91903 I 0.825