ELAVL1 (Cavia porcellus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCPOG00000011884 T35843_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.829
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.829
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.829
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.829
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.829
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.829
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000010690 RRM 1 35
ENSCPOP00000010690 RRM 51 119
ENSCPOP00000010690 RRM 189 259

Links

Other RRM family RBPs
Other Cavia porcellus RBPs

50 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ELAVL1 Procavia capensis ENSPCAG00000016012 I 0.994
ELAVL1 Echinops telfairi ENSETEG00000012985 I 0.994
ENSCHOG00000006810 Choloepus hoffmanni ENSCHOG00000006810 I 0.994
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.829
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.829
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.829
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.829
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.829
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.829
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.829
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.829
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.829
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.829
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.829
ELAVL1 Felis catus ENSFCAG00000014947 I 0.829
ELAVL1 Homo sapiens ENSG00000066044 D 0.829
Elavl1 Mus musculus ENSMUSG00000040028 I 0.825
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.825
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.825
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.825
LOC100060819 Equus caballus ENSECAG00000019459 I 0.825
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.825
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.825
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.825
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.820
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.820
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.820
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.820
ELAVL1 Dasypus novemcinctus ENSDNOG00000008797 I 0.815
ELAVL1 Spermophilus tridecemlineatus ENSSTOG00000009130 I 0.810
elavl2 Xenopus tropicalis ENSXETG00000009387 I 0.801
elavl1 Xenopus tropicalis ENSXETG00000008752 I 0.796
Q5U259 Xenopus laevis Q5U259 I 0.791
AAH86269 Xenopus laevis AAH86269 I 0.791
AAA96942 Xenopus laevis AAA96942 I 0.787
ELAVL1 Tupaia belangeri ENSTBEG00000015038 N 0.771
elavl1 Danio rerio ENSDARG00000038695 I 0.767
ELAVL2 Microcebus murinus ENSMICG00000001558 I 0.767
AAI16460 Xenopus laevis AAI16460 I 0.748
Q1JQ73 Xenopus laevis Q1JQ73 I 0.748
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.737
ELAVL1 Oryzias latipes ENSORLG00000012435 I 0.736
ELAVL2 Spermophilus tridecemlineatus ENSSTOG00000007792 I 0.733
hug Danio rerio ENSDARG00000016405 I 0.730
ELAVL1 Gasterosteus aculeatus ENSGACG00000010657 I 0.729
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.725
ELAVL1 Takifugu rubripes ENSTRUG00000004559 I 0.720
ELAVL1 Gasterosteus aculeatus ENSGACG00000013329 I 0.716
ELAVL1 Tetraodon nigroviridis ENSTNIG00000019823 I 0.712
ELAVL1 Oryzias latipes ENSORLG00000000087 I 0.706