B9IHG4_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0016s02440 T45675_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0016s02440.1 RRM 135 203
POPTR_0016s02440.1 RRM 242 311

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30006.m000276 Ricinus communis 30006.m000276 N 0.878
30099.m001684 Ricinus communis 30099.m001684 N 0.863
AT2G41060 Arabidopsis thaliana AT2G41060-TAIR-G N 0.806
UBA2A Arabidopsis thaliana AT3G56860-TAIR-G N 0.820
BGIOSIBCE001249 Oryza indica BGIOSIBCE001249 N 0.721
BRADI2G09820 Brachypodium distachyon BRADI2G09820 N 0.750
cassava22353.valid.m1 Manihot esculenta cassava22353.valid.m1 N 0.777
cassava22354.valid.m1 Manihot esculenta cassava22354.valid.m1 N 0.777
cassava22355.valid.m1 Manihot esculenta cassava22355.valid.m1 N 0.777
cassava22357.valid.m1 Manihot esculenta cassava22357.valid.m1 N 0.770
cassava22358.valid.m1 Manihot esculenta cassava22358.valid.m1 N 0.770
cassava6906.valid.m1 Manihot esculenta cassava6906.valid.m1 N 0.827
cassava8977.m1 Manihot esculenta cassava8977.m1 N 0.856
chr2.CM0031.350.nc Lotus japonicus chr2.CM0031.350.nc N 0.707
Cucsa.250370 Cucumis sativus Cucsa.250370 N 0.856
XM_002878068.1 Arabidopsis lyrata fgenesh2_kg.5__2117__AT3G56860.3 N 0.813
Glyma02g44330.1 Glycine max Glyma02g44330.1 N 0.743
Glyma03g27290.1 Glycine max Glyma03g27290.1 N 0.827
Glyma14g04480.1 Glycine max Glyma14g04480.1 N 0.736
Glyma19g30250.1 Glycine max Glyma19g30250.1 N 0.835
GRMZM2G132465 Zea mays GRMZM2G132465 N 0.748
GSVIVG00037491001 Vitis vinifera GSVIVG00037491001 N 0.784
LOC_Os01g16090 Oryza sativa LOC_Os01g16090 N 0.721
MDP0000218409 Malus x domestica MDP0000218409 N 0.849
MDP0000381936 Malus x domestica MDP0000381936 N 0.820
MDP0000792725 Malus x domestica MDP0000792725 N 0.820
MDP0000905699 Malus x domestica MDP0000905699 N 0.849
Medtr5g095270 Medicago truncatula Medtr5g095270 N 0.714
Medtr7g104960 Medicago truncatula Medtr7g104960 N 0.813
mgf002509m Mimulus guttatus mgf002509m N 0.748
mgf005672m Mimulus guttatus mgf005672m N 0.748
mgf012484m Mimulus guttatus mgf012484m N 0.748
mgf019210m Mimulus guttatus mgf019210m N 0.734
PK11606.1 Cannabis sativa PK11606.1 N 0.750
PK27017.1 Cannabis sativa PK27017.1 N 0.806
B9HDH2_POPTR Populus trichocarpa POPTR_0006s02650 N 0.899
ppa004648m Prunus persica ppa004648m N 0.856
SB03G010380 Sorghum bicolor Sb03g010380 N 0.705
XM_002879859.1 Arabidopsis lyrata scaffold_402914.1 N 0.806