cassava40632.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava40632.m1 T49383_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava40632.m1 RRM 1 64

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

72 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH44695 Xenopus laevis AAH44695 N 0.000
AAH44990 Xenopus laevis AAH44990 N 0.000
AAH72952 Xenopus laevis AAH72952 N 0.000
AAH73641 Xenopus laevis AAH73641 N 0.000
AAI08874 Xenopus laevis AAI08874 N 0.000
Ame_R003489 Ailuropoda melanoleuca Ame_R003489 N 0.000
Ame_R009558 Ailuropoda melanoleuca Ame_R009558 N 0.000
TRA2A Anolis carolinensis ENSACAG00000013502 N 0.000
TRA2B_BOVIN Bos taurus ENSBTAG00000001697 N 0.000
Q2KJ71_BOVIN Bos taurus ENSBTAG00000012622 N 0.000
TRA2A Canis familiaris ENSCAFG00000002788 N 0.000
TRA2B Canis familiaris ENSCAFG00000013345 N 0.000
TRA2A Choloepus hoffmanni ENSCHOG00000001130 N 0.000
TRA2A Callithrix jacchus ENSCJAG00000001509 N 0.000
LOC100398526 Callithrix jacchus ENSCJAG00000014710 N 0.000
TRA2B Cavia porcellus ENSCPOG00000006313 N 0.000
TRA2A Cavia porcellus ENSCPOG00000010739 N 0.000
tra2b Danio rerio ENSDARG00000002168 N 0.000
tra2a Danio rerio ENSDARG00000007863 N 0.000
ENSDNOG00000011679 Dasypus novemcinctus ENSDNOG00000011679 N 0.000
ENSDNOG00000018192 Dasypus novemcinctus ENSDNOG00000018192 N 0.000
ENSDORG00000004468 Dipodomys ordii ENSDORG00000004468 N 0.000
Tra2a Dipodomys ordii ENSDORG00000009361 N 0.000
LOC100068009 Equus caballus ENSECAG00000011508 N 0.000
LOC100067887 Equus caballus ENSECAG00000012701 N 0.000
TRA2B Erinaceus europaeus ENSEEUG00000009822 N 0.000
TRA2A Erinaceus europaeus ENSEEUG00000015674 N 0.000
TRA2A Echinops telfairi ENSETEG00000007250 N 0.000
TRA2B Felis catus ENSFCAG00000010526 N 0.000
TRA2B Homo sapiens ENSG00000136527 D 0.000
TRA2A Homo sapiens ENSG00000164548 N 0.000
TRA2B Gasterosteus aculeatus ENSGACG00000005986 N 0.000
TRA2A Gasterosteus aculeatus ENSGACG00000006878 N 0.000
ENSGACG00000010109 Gasterosteus aculeatus ENSGACG00000010109 N 0.000
Q9DDU8_CHICK Gallus gallus ENSGALG00000006531 N 0.000
Q5ZLY6_CHICK Gallus gallus ENSGALG00000010973 N 0.000
TRA2A Gorilla gorilla ENSGGOG00000009053 N 0.000
TRA2B Gorilla gorilla ENSGGOG00000009844 N 0.000
TRA2A Loxodonta africana ENSLAFG00000006598 N 0.000
TRA2B Loxodonta africana ENSLAFG00000017165 N 0.000
TRA2A Macropus eugenii ENSMEUG00000001202 N 0.000
TRA2B Macropus eugenii ENSMEUG00000013768 N 0.000
ENSMGAG00000002853 Meleagris gallopavo ENSMGAG00000002853 N 0.000
TRA2A Meleagris gallopavo ENSMGAG00000010514 N 0.000
TRA2B Microcebus murinus ENSMICG00000010611 N 0.000
ENSMLUG00000005781 Myotis lucifugus ENSMLUG00000005781 N 0.000
TRA2B Myotis lucifugus ENSMLUG00000008670 N 0.000
TRA2A Myotis lucifugus ENSMLUG00000013972 N 0.000
Q8WMQ0_MACMU Macaca mulatta ENSMMUG00000001185 N 0.000
Q8WMQ1_MACMU Macaca mulatta ENSMMUG00000006286 N 0.000
TRA2A Monodelphis domestica ENSMODG00000000807 N 0.000
ENSMODG00000009767 Monodelphis domestica ENSMODG00000009767 N 0.000
TRA2B Monodelphis domestica ENSMODG00000013248 N 0.000
ENSMODG00000015264 Monodelphis domestica ENSMODG00000015264 N 0.000
Tra2b Mus musculus ENSMUSG00000022858 N 0.000
Tra2a Mus musculus ENSMUSG00000029817 N 0.000
TRA2B Ornithorhynchus anatinus ENSOANG00000013953 N 0.000
TRA2A Ornithorhynchus anatinus ENSOANG00000014202 N 0.000
TRA2B Oryctolagus cuniculus ENSOCUG00000008940 N 0.000
TRA2A Oryctolagus cuniculus ENSOCUG00000024139 N 0.000
TRA2B Otolemur garnettii ENSOGAG00000005386 N 0.000
TRA2A Otolemur garnettii ENSOGAG00000009733 N 0.000
TRA2A Ochotona princeps ENSOPRG00000007606 N 0.000
TRA2B Ochotona princeps ENSOPRG00000007990 N 0.000
Q6I6X8_ORYLA Oryzias latipes ENSORLG00000013780 N 0.000
Q6I6X6_ORYLA Oryzias latipes ENSORLG00000016554 N 0.000
TRA2A Procavia capensis ENSPCAG00000004148 N 0.000
ENSPPYG00000014374 Pongo pygmaeus ENSPPYG00000014374 N 0.000
ENSPPYG00000017728 Pongo pygmaeus ENSPPYG00000017728 N 0.000
TRA2B Pan troglodytes ENSPTRG00000015707 N 0.000
TRA2A Pan troglodytes ENSPTRG00000018988 N 0.000
TRA2B Pteropus vampyrus ENSPVAG00000008615 N 0.000
TRA2A Pteropus vampyrus ENSPVAG00000011298 N 0.000
Tra2b Rattus norvegicus ENSRNOG00000001783 N 0.000
D3ZLN0_RAT Rattus norvegicus ENSRNOG00000002201 N 0.000
Tra2b Rattus norvegicus ENSRNOG00000005867 N 0.000
Tra2a Rattus norvegicus ENSRNOG00000009156 N 0.000
TRA2B Sorex araneus ENSSARG00000007638 N 0.000
TRA2A Sus scrofa ENSSSCG00000015387 N 0.000
TRA2B Spermophilus tridecemlineatus ENSSTOG00000006720 N 0.000
TRA2A Spermophilus tridecemlineatus ENSSTOG00000012073 N 0.000
TRA2A Tupaia belangeri ENSTBEG00000013773 N 0.000
TRA2B Tupaia belangeri ENSTBEG00000015927 N 0.000
TRA2A Taeniopygia guttata ENSTGUG00000002795 N 0.000
SFRS10 Taeniopygia guttata ENSTGUG00000006742 N 0.000
SFRS10 Taeniopygia guttata ENSTGUG00000017023 N 0.000
ENSTNIG00000017210 Tetraodon nigroviridis ENSTNIG00000017210 N 0.000
ENSTRUG00000015168 Takifugu rubripes ENSTRUG00000015168 N 0.000
TRA2B Tarsius syrichta ENSTSYG00000000652 N 0.000
TRA2B Tursiops truncatus ENSTTRG00000008243 N 0.000
TRA2A Tursiops truncatus ENSTTRG00000008922 N 0.000
TRA2B Vicugna pacos ENSVPAG00000012015 N 0.000
tra2a Xenopus tropicalis ENSXETG00000007397 N 0.000
tra2b Xenopus tropicalis ENSXETG00000007511 N 0.000
e_gw.35.152.1 Nematostella vectensis e_gw.35.152.1 N 0.000
ISCW010309 Ixodes scapularis ISCW010309 N 0.000