fgenesh1_pm.C_scaffold_6000038 (Sporobolomyces roseus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh1_pm.C_scaffold_6000038 T52087_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_6000038 RRM 102 170

Links

Other RRM family RBPs
Other Sporobolomyces roseus RBPs

80 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30147.m014356 Ricinus communis 30147.m014356 N 0.725
30147.m014359 Ricinus communis 30147.m014359 N 0.739
BC1G_07056 Botrytis cinerea BC1G_07056 N 0.729
BDBG_02376 Blastomyces dermatitidis BDBG_02376 N 0.757
ACLA_026010 Aspergillus clavatus CADACLAG00002760 N 0.771
AFUA_1G09490 Aspergillus fumigatus CADAFUAG00007045 N 0.771
An08g01040 Aspergillus niger CADANGAG00006423 N 0.786
ANIA_01340 Aspergillus nidulans CADANIAG00001272 N 0.771
AO090012000924 Aspergillus oryzae CADAORAG00006445 N 0.771
NFIA_016120 Neosartorya fischeri CADNFIAG00000670 N 0.771
cassava18862.valid.m1 Manihot esculenta cassava18862.valid.m1 N 0.710
cassava44009.valid.m1 Manihot esculenta cassava44009.valid.m1 N 0.725
CC1G_14585 Coprinopsis cinerea CC1G_14585 N 0.714
CIMG_07119 Coccidioides immitis CIMG_07119 N 0.757
CNBG_5499 Cryptococcus neoformans CNBG_5499 N 0.771
CPSG_01188 Coccidioides posadasii CPSG_01188 N 0.757
Cucsa.093920 Cucumis sativus Cucsa.093920 N 0.739
EAT87520.1 Phaeosphaeria nodorum EAT87520.1 N 0.700
EDP44971.1 Malassezia globosa EDP44971.1 N 0.786
estExt_fgenesh1_pm.C_10632 Trichoderma atroviride estExt_fgenesh1_pm.C_10632 N 0.714
estExt_fgenesh2_kg.C_20042 Neurospora tetrasperma estExt_fgenesh2_kg.C_20042 N 0.729
estExt_fgenesh3_kg.C_60298 Neurospora discreta estExt_fgenesh3_kg.C_60298 N 0.729
estExt_Genewise1.C_10557 Volvox carteri estExt_Genewise1.C_10557 N 0.725
estExt_Genewise1.C_11041 Mucor circinelloides estExt_Genewise1.C_11041 N 0.757
estExt_Genewise1.C_260003 Chlorella vulgaris estExt_Genewise1.C_260003 N 0.710
estExt_Genewise1.C_260068 Coccomyxa C 169 estExt_Genewise1.C_260068 N 0.710
estExt_Genewise1Plus.C_40474 Tremella mesenterica estExt_Genewise1Plus.C_40474 N 0.786
estExt_Genewise1Plus.C_chr_120039 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_120039 N 0.714
e_gw1.0.1424.1 Selaginella moellendorfii e_gw1.0.1424.1 N 0.739
e_gw1.29.77.1 Phycomyces blakesleeanus e_gw1.29.77.1 I 0.757
e_gw1.4.1867.1 Agaricus bisporus e_gw1.4.1867.1 N 0.729
e_gw1.4.2157.1 Pleurotus ostreatus e_gw1.4.2157.1 N 0.700
e_gw1.4.511.1 Trichoderma reesei e_gw1.4.511.1 N 0.714
e_gw1.5.977.1 Nectria haematococca e_gw1.5.977.1 N 0.729
e_gw1.7.1421.1 Cryphonectria parasitica e_gw1.7.1421.1 N 0.743
fgenesh1_pm.00083_#_765 Aspergillus carbonarius fgenesh1_pm.00083_#_765 N 0.771
FGSG_10271 Fusarium graminearum FGSG_10271 N 0.729
FOXG_05189 Fusarium oxysporum FOXG_05189 N 0.714
FVEG_02944 Fusarium verticillioides FVEG_02944 N 0.714
GLRG_10164 Colletotrichum graminicola GLRG_10164 N 0.729
Glyma05g31030.1 Glycine max Glyma05g31030.1 N 0.710
Glyma08g14240.1 Glycine max Glyma08g14240.1 N 0.710
Glyma10g33490.1 Glycine max Glyma10g33490.1 N 0.725
Glyma20g34100.1 Glycine max Glyma20g34100.1 N 0.725
GP3.065690 Batrachochytrium dendrobatidis GP3.065690 N 0.743
GSTUMT00011743001 Tuber melanosporum GSTUMT00011743001 N 0.757
gw1.9.853.1 Trichoderma virens gw1.9.853.1 N 0.714
gww1.2.642.1 Laccaria bicolor gww1.2.642.1 N 0.714
LOC_Os06g11620 Oryza sativa LOC_Os06g11620 N 0.710
MCYG_08495 Microsporum canis MCYG_08495 N 0.771
MDP0000243651 Malus x domestica MDP0000243651 N 0.725
mgf005737m Mimulus guttatus mgf005737m N 0.710
mgf006490m Mimulus guttatus mgf006490m N 0.710
mgf023117m Mimulus guttatus mgf023117m N 0.739
MGG_07252 Magnaporthe oryzae MGG_07252 N 0.714
MGYG_08646 Microsporum gypseum MGYG_08646 N 0.757
NCU03946 Neurospora crassa NCU03946 N 0.729
PABG_00587 Paracoccidioides brasiliensis PABG_00587 N 0.757
Pc16g02770 Penicillium chrysogenum Pc16g02770 N 0.771
PGTG_01300 Puccinia graminis PGTG_01300 N 0.714
PK03244.1 Cannabis sativa PK03244.1 N 0.710
PK23225.1 Cannabis sativa PK23225.1 N 0.725
PMAA_025390 Penicillium marneffei PMAA_025390 N 0.771
B9ICE3_POPTR Populus trichocarpa POPTR_0015s12230 N 0.725
ppa010052m Prunus persica ppa010052m N 0.725
PredSwiss_CON654.3 Pneumocystis carinii PredSwiss_CON654.3 I 0.743
PTTG_05043 Puccinia triticina PTTG_05043 N 0.714
RO3G_09831 Rhizopus oryzae RO3G_09831 N 0.757
SB10G007620 Sorghum bicolor Sb10g007620 N 0.710
SJAG_04601 Schizosaccharomyces japonicus SJAG_04601 N 0.700
SNOG_05129 Stagonospora nodorum SNOG_05129 N 0.700
pab2 Schizosaccharomyces pombe SPBC16E9.12c N 0.714
SPPG_00782 Spizellomyces punctatus SPPG_00782 N 0.729
SS1G_03706 Sclerotinia sclerotiorum SS1G_03706 N 0.729
TERG_02884 Trichophyton rubrum TERG_02884 N 0.757
TESG_01534 Trichophyton tonsurans TESG_01534 N 0.757
UM02401 Ustilago maydis UM02401 N 0.814
UREG_05781 Uncinocarpus reesii UREG_05781 N 0.757
VDAG_00074 Verticillium dahliae VDAG_00074 N 0.729
VDBG_00465 Verticillium albo atrum VDBG_00465 N 0.729