gw1.9.853.1 (Trichoderma virens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 gw1.9.853.1 T53416_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.9.853.1 RRM 46 115

Links

Other RRM family RBPs
Other Trichoderma virens RBPs

64 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw1.4.511.1 Trichoderma reesei e_gw1.4.511.1 N 1.000
estExt_fgenesh1_pm.C_10632 Trichoderma atroviride estExt_fgenesh1_pm.C_10632 N 1.000
e_gw1.5.977.1 Nectria haematococca e_gw1.5.977.1 N 0.986
VDAG_00074 Verticillium dahliae VDAG_00074 N 0.986
VDBG_00465 Verticillium albo atrum VDBG_00465 N 0.986
GLRG_10164 Colletotrichum graminicola GLRG_10164 N 0.986
NCU03946 Neurospora crassa NCU03946 N 0.986
estExt_fgenesh3_kg.C_60298 Neurospora discreta estExt_fgenesh3_kg.C_60298 N 0.986
estExt_fgenesh2_kg.C_20042 Neurospora tetrasperma estExt_fgenesh2_kg.C_20042 N 0.986
MGG_07252 Magnaporthe oryzae MGG_07252 N 0.971
e_gw1.7.1421.1 Cryphonectria parasitica e_gw1.7.1421.1 N 0.957
FOXG_05189 Fusarium oxysporum FOXG_05189 N 0.957
FVEG_02944 Fusarium verticillioides FVEG_02944 N 0.957
PABG_00587 Paracoccidioides brasiliensis PABG_00587 N 0.929
FGSG_10271 Fusarium graminearum FGSG_10271 N 0.929
NFIA_016120 Neosartorya fischeri CADNFIAG00000670 N 0.929
ANIA_01340 Aspergillus nidulans CADANIAG00001272 N 0.929
SS1G_03706 Sclerotinia sclerotiorum SS1G_03706 N 0.929
AFUA_1G09490 Aspergillus fumigatus CADAFUAG00007045 N 0.929
fgenesh1_pm.00083_#_765 Aspergillus carbonarius fgenesh1_pm.00083_#_765 N 0.929
BDBG_02376 Blastomyces dermatitidis BDBG_02376 N 0.929
ACLA_026010 Aspergillus clavatus CADACLAG00002760 N 0.929
BC1G_07056 Botrytis cinerea BC1G_07056 N 0.929
MGYG_08646 Microsporum gypseum MGYG_08646 N 0.914
An08g01040 Aspergillus niger CADANGAG00006423 N 0.914
AO090012000924 Aspergillus oryzae CADAORAG00006445 N 0.914
PMAA_025390 Penicillium marneffei PMAA_025390 N 0.914
Pc16g02770 Penicillium chrysogenum Pc16g02770 N 0.914
UREG_05781 Uncinocarpus reesii UREG_05781 N 0.914
TERG_02884 Trichophyton rubrum TERG_02884 N 0.914
TESG_01534 Trichophyton tonsurans TESG_01534 N 0.914
GSTUMT00011743001 Tuber melanosporum GSTUMT00011743001 N 0.914
CHGG_08656 Chaetomium globosum CHGG_08656 N 0.901
estExt_fgenesh1_kg.C_50066 Myceliophthora thermophila estExt_fgenesh1_kg.C_50066 N 0.901
MCYG_08495 Microsporum canis MCYG_08495 N 0.900
CIMG_07119 Coccidioides immitis CIMG_07119 N 0.900
CPSG_01188 Coccidioides posadasii CPSG_01188 N 0.900
estExt_fgenesh2_kg.C_50198 Thielavia terrestris estExt_fgenesh2_kg.C_50198 N 0.887
Pa_4_2600 Podospora anserina Pa_4_2600 N 0.831
estExt_Genewise1Plus.C_chr_120039 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_120039 N 0.829
SNOG_05129 Stagonospora nodorum SNOG_05129 N 0.829
EAT87520.1 Phaeosphaeria nodorum EAT87520.1 N 0.829
estExt_Genewise1.C_100240 Cochliobolus heterostrophus C5 estExt_Genewise1.C_100240 N 0.800
UM02401 Ustilago maydis UM02401 N 0.800
PTRG_03828 Pyrenophora tritici repentis PTRG_03828 N 0.800
AB03725.1 Alternaria brassicicola AB03725.1 N 0.800
SPPG_00782 Spizellomyces punctatus SPPG_00782 N 0.771
CNBG_5499 Cryptococcus neoformans CNBG_5499 N 0.729
estExt_Genewise1Plus.C_40474 Tremella mesenterica estExt_Genewise1Plus.C_40474 N 0.714
EDP44971.1 Malassezia globosa EDP44971.1 N 0.714
estExt_Genewise1.C_11041 Mucor circinelloides estExt_Genewise1.C_11041 N 0.714
fgenesh1_pm.C_scaffold_6000038 Sporobolomyces roseus fgenesh1_pm.C_scaffold_6000038 N 0.714
RO3G_09831 Rhizopus oryzae RO3G_09831 N 0.714
GP3.065690 Batrachochytrium dendrobatidis GP3.065690 N 0.714
CC1G_14585 Coprinopsis cinerea CC1G_14585 N 0.714
estExt_fgenesh1_pm.C_10518 Schizophyllum commune estExt_fgenesh1_pm.C_10518 N 0.704
PredSwiss_CON654.3 Pneumocystis carinii PredSwiss_CON654.3 I 0.700
Glyma15g06030.1 Glycine max Glyma15g06030.1 N 0.700
PDK_20s1311211g001 Phoenix dactylifera PDK_20s1311211g001 N 0.700
Cucsa.093720 Cucumis sativus Cucsa.093720 N 0.700
Cucsa.398220 Cucumis sativus Cucsa.398220 N 0.700
e_gw1.26.703.1 Selaginella moellendorfii e_gw1.26.703.1 N 0.700
ppa011157m Prunus persica ppa011157m N 0.700
e_gw1.4.2157.1 Pleurotus ostreatus e_gw1.4.2157.1 N 0.700