CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AB00309.1
(
Alternaria brassicicola
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AB00309.1
T55380_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AB00309.1
RRM
85
161
LYVGGLDPRVTEDVLRQIFETTGHVQSVKIIPDKTASSPSFNSKGFNYGFVEYDDPGAAERGMATLNGRRIHNNEIR
AB00309.1
RRM
182
252
IFVGDLSNEVNDEVLLQAFSTFGPVSEARVMWDMKTGRSRGYGFVAFRDRADADRALSSMDGEWLGSRAIR
AB00309.1
RRM
308
372
CYVGNLTPYTSQSDLVPLFQNFGYVTETRFQSDRGFAFIKMDTHENAAMAICQLNGYNVNGRPLK
Links
Other
RRM
family RBPs
Other
Alternaria brassicicola
RBPs
43 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC100395568
Callithrix jacchus
ENSCJAG00000033666
N
0.000
ENSCPOG00000026882
Cavia porcellus
ENSCPOG00000026882
N
0.000
RP11-1286E23.4
Homo sapiens
ENSG00000229924
N
0.000
ENSOCUG00000021017
Oryctolagus cuniculus
ENSOCUG00000021017
N
0.000
ENSOCUG00000023886
Oryctolagus cuniculus
ENSOCUG00000023886
N
0.000
ENSOCUG00000025650
Oryctolagus cuniculus
ENSOCUG00000025650
N
0.000
ENSPVAG00000010090
Pteropus vampyrus
ENSPVAG00000010090
N
0.000