CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
Ame_R016242
(
Ailuropoda melanoleuca
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Ame_R016242
T55625_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CNOT4
M147_0.6
Homo sapiens
GACAGA
RNAcompete
Ray et al.(2013)
RNCMPT00156
1.000
e_gw.71.47.1
M233_0.6
Nematostella vectensis
AGAYASA
RNAcompete
Ray et al.(2013)
RNCMPT00278
0.766
Cnot4
M008_0.6
Drosophila melanogaster
ASACAHW
RNAcompete
Ray et al.(2013)
RNCMPT00008
0.727
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ame_R016242
RRM
111
187
VFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK
Links
Other
RRM
family RBPs
Other
Ailuropoda melanoleuca
RBPs
68 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BC1G_08821
Botrytis cinerea
BC1G_08821
N
0.000
An14g00030
Aspergillus niger
CADANGAG00010939
N
0.000
CHGG_06745
Chaetomium globosum
CHGG_06745
N
0.000
CIMG_12189
Coccidioides immitis
CIMG_12189
N
0.000
CPSG_08193
Coccidioides posadasii
CPSG_08193
N
0.000
estExt_fgenesh1_pg.C_11331
Myceliophthora thermophila
estExt_fgenesh1_pg.C_11331
N
0.000
estExt_fgenesh1_pg.C_120202
Trichoderma virens
estExt_fgenesh1_pg.C_120202
N
0.000
fgenesh1_pg.sca_2_chr3_3_0000636
Nectria haematococca
fgenesh1_pg.sca_2_chr3_3_0000636
N
0.000
fgenesh1_pm.00795_#_5
Aspergillus carbonarius
fgenesh1_pm.00795_#_5
N
0.000
fgenesh1_pm.C_scaffold_5000117
Trichoderma atroviride
fgenesh1_pm.C_scaffold_5000117
N
0.000
fgenesh2_pm.1_#_1966
Thielavia terrestris
fgenesh2_pm.1_#_1966
N
0.000
fgenesh5_pg.C_scaffold_16000144
Trichoderma reesei
fgenesh5_pg.C_scaffold_16000144
N
0.000
FGSG_08536
Fusarium graminearum
FGSG_08536
N
0.000
GLRG_07568
Colletotrichum graminicola
GLRG_07568
N
0.000
NCU09901
Neurospora crassa
NCU09901
N
0.000
Pa_6_10870
Podospora anserina
Pa_6_10870
N
0.000
Pc13g05610
Penicillium chrysogenum
Pc13g05610
N
0.000
VDAG_02725
Verticillium dahliae
VDAG_02725
N
0.000