Ame_R016242 (Ailuropoda melanoleuca)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Ame_R016242 T55625_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CNOT4
M147_0.6 		Homo sapiens GACAGA RNAcompete
Ray et al.(2013)
RNCMPT00156 		1.000
e_gw.71.47.1
M233_0.6 		Nematostella vectensis AGAYASA RNAcompete
Ray et al.(2013)
RNCMPT00278 		0.766
Cnot4
M008_0.6 		Drosophila melanogaster ASACAHW RNAcompete
Ray et al.(2013)
RNCMPT00008 		0.727
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Ame_R016242 RRM 111 187

Links

Other RRM family RBPs
Other Ailuropoda melanoleuca RBPs

68 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BC1G_08821 Botrytis cinerea BC1G_08821 N 0.000
An14g00030 Aspergillus niger CADANGAG00010939 N 0.000
CHGG_06745 Chaetomium globosum CHGG_06745 N 0.000
CIMG_12189 Coccidioides immitis CIMG_12189 N 0.000
CPSG_08193 Coccidioides posadasii CPSG_08193 N 0.000
estExt_fgenesh1_pg.C_11331 Myceliophthora thermophila estExt_fgenesh1_pg.C_11331 N 0.000
estExt_fgenesh1_pg.C_120202 Trichoderma virens estExt_fgenesh1_pg.C_120202 N 0.000
fgenesh1_pg.sca_2_chr3_3_0000636 Nectria haematococca fgenesh1_pg.sca_2_chr3_3_0000636 N 0.000
fgenesh1_pm.00795_#_5 Aspergillus carbonarius fgenesh1_pm.00795_#_5 N 0.000
fgenesh1_pm.C_scaffold_5000117 Trichoderma atroviride fgenesh1_pm.C_scaffold_5000117 N 0.000
fgenesh2_pm.1_#_1966 Thielavia terrestris fgenesh2_pm.1_#_1966 N 0.000
fgenesh5_pg.C_scaffold_16000144 Trichoderma reesei fgenesh5_pg.C_scaffold_16000144 N 0.000
FGSG_08536 Fusarium graminearum FGSG_08536 N 0.000
GLRG_07568 Colletotrichum graminicola GLRG_07568 N 0.000
NCU09901 Neurospora crassa NCU09901 N 0.000
Pa_6_10870 Podospora anserina Pa_6_10870 N 0.000
Pc13g05610 Penicillium chrysogenum Pc13g05610 N 0.000
VDAG_02725 Verticillium dahliae VDAG_02725 N 0.000